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Knowledge of the health status and potential effect of disease outbreaks among Southern Ocean fauna may be decisive for its conservation. We assessed the exposure and infection of Antarctic fur seals (Arctocephalus gazella, AFS) and Southern elephant seals (Mirounga leonine, SES) to parapoxvirus, Phocid alphaherpesvirus-1 (PhHV-1), smooth Brucella spp. and Toxoplasma gondii. AFS (n = 65) serum and swab samples, and SES (n = 13) serum samples from the sub--Antarctic island of Bouvetøya (54°25’S, 03°22’E) were collected during two austral summers (2014/15, 2017/18). Three polymerase chain reaction (PCR) tests amplifying the DNA polymerase, B2L and GIF parapoxvirus genomic regions were performed, investigating DNA from mucosal swab samples. The glycoprotein B gene was targeted to detect PhHV-1 viral DNA. Sera were assayed for T. gondii and smooth Brucella spp. antibodies with indirect enzyme-linked immunosorbent assays. Parapoxvirus PCR amplicons of the expected size were generated in two of the 29 AFS pups (nasal swabs, 2014/15), targeting the B2L (n = 2) and DNA polymerase (n = 1) genes, whereas the GIF PCR did not amplify target sequences. The PCR amplicons were sequenced and blasted in GenBank, revealing highest similarity with a seal parapoxvirus, confirming the presence of the virus in AFS for the first time. No PhHV-1 amplicons were generated, and antibodies against T. gondii or smooth Brucella spp. were not detected. Our data indicate that these seals are host for parapoxvirus but are neither exposed to smooth Brucella spp. nor T. gondii. Evidence of PhHV-1 shedding was not detected.

In this article, we analyze the impacts of climate change on Antarctic marine ecosystems. Observations demonstrate large-scale changes in the physical variables and circulation of the Southern Ocean driven by warming, stratospheric ozone depletion, and a positive Southern Annular Mode. Alterations in the physical environment are driving change through all levels of Antarctic marine food webs, which differ regionally. The distributions of key species, such as Antarctic krill, are also changing. Differential responses among predators reflect differences in species ecology. The impacts of climate change on Antarctic biodiversity will likely vary for different communities and depend on species range. Coastal communities and those of sub-Antarctic islands, especially range-restricted endemic communities, will likely suffer the greatest negative consequences of climate change. Simultaneously, ecosystem services in the Southern Ocean will likely increase. Such decoupling of ecosystem services and endemic species will require consideration in the management of human activities such as fishing in Antarctic marine ecosystems.

The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.

The Filchner-Ronne Ice Shelf, fringing the southern Weddell Sea, is Antarctica's second largest ice shelf. At present, basal melt rates are low due to active dense water formation; however, model projections suggest a drastic increase in the future due to enhanced inflow of open-ocean warm water. Mooring observations from 2014 to 2016 along the eastern flank of the Filchner Trough (76°S) revealed a distinct seasonal cycle with inflow if Warm Deep Water during summer and autumn. Here we present extended time series showing an exceptionally warm and long inflow in 2017, with maximum temperatures exceeding 0.5°C. Warm temperatures persisted throughout winter, associated with a fresh anomaly, which lead to a change in stratification over the shelf, favoring an earlier inflow in the following summer. We suggest that the fresh anomaly developed upstream after anomalous summer sea ice melting and contributed to a shoaling of the shelf break thermocline.

The Southern Ocean is chronically undersampled due to its remoteness, harsh environment, and sea ice cover. Ocean circulation models yield significant insight into key processes and to some extent obviate the dearth of data; however, they often underestimate surface mixed layer depth (MLD), with consequences for surface water-column temperature, salinity, and nutrient concentration. In this study, a coupled circulation and sea ice model was implemented for the region adjacent to the West Antarctic Peninsula, a climatically sensitive region which has exhibited decadal trends towards higher ocean temperature, shorter sea ice season, and increasing glacial freshwater input, overlain by strong interannual variability. Hindcast simulations were conducted with different air-ice drag coefficients and Langmuir circulation parameterizations to determine the impact of these factors on MLD. Including Langmuir circulation deepened the surface mixed layer, with the deepening being more pronounced in the shelf and slope regions. Optimal selection of an air-ice drag coefficient also increased modeled MLD by similar amounts and had a larger impact in improving the reliability of the simulated MLD interannual variability. This study highlights the importance of sea ice volume and redistribution to correctly reproduce the physics of the underlying ocean, and the potential of appropriately parameterizing Langmuir circulation to help correct for biases towards shallow MLD in the Southern Ocean. The model also reproduces observed freshwater patterns in the West Antarctic Peninsula during late summer and suggests that areas of intense summertime sea ice melt can still show net annual freezing due to high sea ice formation during the winter.

Abstract Individual heterogeneity in diet and foraging behaviour is common in wild animal populations, and can be a strong determinant of how populations respond to environmental changes. Within populations, variation in foraging behaviour and the occurrence of individual tactics in relation to resources distribution can help explain differences in individual fitness, and ultimately identify important factors affecting population dynamics. We examined how foraging behaviour and habitat during the breeding period related to the physiological state of a long-ranging seabird adapted to sea ice, the Antarctic petrel Thalassoica antarctica. Firstly, using GPS tracking and state-switching movement modelling (hidden Markov models) on 124 individual birds, we tested for the occurrence of distinct foraging tactics within our study population. Our results highlight a large variation in the movement and foraging behaviour of a very mobile seabird, and delineate distinct foraging tactics along a gradient from foraging in dense pack ice to foraging in open water. Secondly, we investigated the effects of these foraging tactics on individual state at return from a foraging trip. We combined movement data with morphometric and physiological measurements of a suite of plasma metabolites that provided a general picture of a bird's individual state. Foraging in denser sea ice was associated with lower gain in body mass during brooding, as well as lower level of energy acquisition (plasma triacylglycerol) during both brooding and incubation. We found no clear relationship between the foraging tactic in relation to sea ice and the energetic stress (changes in plasma corticosterone), energetic balance (β-hydroxybutyrate) or trophic level (δ15N). However, a shorter foraging range was related to both the energetic balance (positively) and the trophic level (negatively). Our results highlight a diverse range of foraging tactics in relation to sea ice in Antarctic petrels. While the various foraging tactics do not seem to strongly alter energetic balance, they may affect other aspects of Antarctic petrels' physiology. Future changes in sea-ice habitats can thus be expected to have an impact on the individual state of seabirds such as Antarctic petrels, which could ultimately affect their population dynamics. Nonetheless, strong individual heterogeneity in the use of sea-ice habitats by a typical pagophilic species might strengthen its resilience to environmental changes and in particular to forecasted sea-ice loss. A free Plain Language Summary can be found within the Supporting Information of this article.

Microcontinents and continental fragments are small pieces of continental crust that are surrounded by oceanic lithosphere. Although classically associated with passive margin formation, here we present several preserved microcontinents and continental fragments associated with subduction systems. They are located in the Coral Sea, South China Sea, central Mediterranean and Scotia Sea regions, and a “proto-microcontinent,” in the Gulf of California. Reviewing the tectonic history of each region and interpreting a variety of geophysical data allows us to identify parameters controlling the formation of microcontinents and continental fragments in subduction settings. All these tectonic blocks experienced long, complex tectonic histories with an important role for developing inherited structures. They tend to form in back-arc locations and separate from their parent continent by oblique or rotational kinematics. The separated continental pieces and associated marginal basins are generally small and their formation is quick (<50 Myr). Microcontinents and continental fragments formed close to large continental masses tend to form faster than those created in systems bordered by large oceanic plates. A common triggering mechanism for their formation is difficult to identify, but seems to be linked with rapid changes of complex subduction dynamics. The young ages of all contemporary pieces found in situ suggest that microcontinents and continental fragments in these settings are short lived. Although presently the amount of in-situ subduction-related microcontinents is meager (an area of 0.56% and 0.28% of global, non-cratonic, continental crustal area and crustal volume, respectively), through time microcontinents contributed to terrane amalgamation and larger continent formation.

Winter to summer CO2 dynamics within landfast sea ice in McMurdo Sound (Antarctica) were investigated using bulk ice pCO2 measurements, air-snow-ice CO2 fluxes, dissolved inorganic carbon (DIC), total alkalinity (TA), and ikaite saturation state. Our results suggest depth-dependent biotic and abiotic controls that led us to discriminate the ice column in three layers. At the surface, winter pCO2 supersaturation drove CO2 release to the atmosphere while spring-summer pCO2 undersaturation led to CO2 uptake most of the time. CO2 fluxes showed a diel pattern superimposed upon this seasonal pattern which was potentially assigned to either ice skin freeze-thaw cycles or diel changes in net community production. In the ice interior, the pCO2 decrease across the season was driven by physical processes, mainly independent of the autotrophic and heterotrophic phases. Bottom sea ice was characterized by a massive biomass build-up counterintuitively associated with transient heterotrophic activity and nitrate plus nitrite accumulation. This inconsistency is likely related to the formation of a biofilm. This biofilm hosts both autotrophic and heterotrophic activities at the bottom of the ice during spring and may promote calcium carbonate precipitation.

Over seks tiår fylte glinsende fett fra hundretusenvis av hval råstoffbehov til multinasjonale konserners margarin- og såpeprodukter. Hoffleverandørene var norske hvalfangere. Fra spekkjelene like etter århundreskiftet ble fyrt opp på Sør-Georgia til det flytende kokeriet Kosmos IV ankret opp i Sandefjord på slutten av 1960-tallet, skulle hvalfangst dominere og forme utviklingen av finansmarked, konsumvarer og kapitalisme i Norge. Dette er en fortelling om eksplosivt voksende rikdom og merkevarebygging, men også en biologisk tragedie. Et nådeløst møte mellom jordens største dyr, effektiv fangsteknologi og konsumindustri. Dette er en flerfasettert historie om et kapitalfattig lands industrialisering, skattesky redere og multinasjonale fettkjemper, men også om ubegrensede offer og tap. Om norsk polarimperialisme og globalt salg utfordret av stormakter og skiftende konjunkturer. Dette er historien om "Den siste olje".

Global climate change is significantly affecting marine life off the northern tip of the Antarctic Peninsula, but little is known about microbial ecology in this area. The main goal of this study was to investigate the bacterioplankton community structure in surface waters using pyrosequencing and to determine factors influencing this community. Pelagibacterales and Rhodobacterales (Alphaproteobacteria), Oceanospirillales and Alteromonadales (Gammaproteobacteria), and Flavobacteriales (Bacteroidetes) were the core taxa in our samples, and the five most relatively abundant genera were Pelagibacter, Polaribacter, Octadecabacter, group HTCC2207 and Sulfitobacter. Although nutrients and chlorophyll a (chl a) contributed more to bacterioplankton community structure than water masses or depth, only 30.39% of the variance could be explained by the investigated environmental factors, as revealed by RDA and pRDA. No significant difference with respect to nutrients and chl a was observed among water masses or depth, as indicated by ANOVA. Furthermore, significant correlations among the dominant bacterial genera were more common than correlations between dominant genera and environmental factors, as revealed by Spearman analysis. We conclude that nutrients and chl a become homogeneous and that interpopulation interactions may have a central role in influencing the bacterial community structure in surface waters off the northern tip of the Antarctic Peninsula during the summer.

An urgent necessity to understand the effect of climatic change on scleractinian cold-water coral (CWC) ecosystems has arisen due to increasing ocean warming and acidification over the last decades. Here, presence-absence records of 12 scleractinian CWC species from research expeditions and the literature were compiled and merged with model-generated pseudo-absence data and 14 environmental variables. The best-fitting results of 9 species distribution models (SDMs) were combined to an ensemble habitat suitability model for CWCs in the northern Southern Ocean (Weddell Sea and Antarctic Peninsula) by means of the open-source R package "biomod2". Furthermore, 2 future scenarios of increasing bottom sea temperature were used to investigate the spatial response of scleractinians to temperature change. The resulting (current scenario) potential ecological niches were evaluated with good to excellent statistical measures. The results predict that present areas of highest probability of CWC occurrence are around the Antarctic Peninsula, South Orkney Islands and Queen Maud Land, with preference to geomorphic features such as seamounts. The distribution of CWC habitats is mainly driven by distance to coast and ice shelves, bathymetry, benthic calcium carbonate, and temperature. Under warming conditions, CWCs are predicted to expand their distribution range by 6 and 10% in 2037 and 2150, respectively, compared to the present distribution. The future models using increased bottom temperature revealed a stable CWC distribution for most parts of the study area. However, habitat shifts are expected to the Filchner Trough region, the adjacent continental shelves, as well as to the eastern side of the Antarctic Peninsula. KEYWORDS: Scleractinian coral · Ensemble models · Environmental change · Habitat suitability model · Spatial distribution · Weddell Sea. Antarctica

Antarctic fur seal (Arctocephalus gazella) colonies are found on sub-Antarctic islands around the continent. These islands experience a range of conditions in terms of physical and biological habitat, creating a natural laboratory to investigate local genetic adaptation. One striking habitat difference is in the availability of Euphausia superba krill as prey, which has led to A. gazella exhibiting a range of diets. A. gazella in some colonies consume exclusively krill, while their conspecifics in other colonies feed mainly on fish and consume few to no krill. To investigate potential adaptations to these different prey fields, reduced representation genome sequencing was conducted on A. gazella from the 8 major colonies. Twenty-seven genomic regions exhibiting signatures of natural selection were identified. Two of these genomic regions were clearly associated with seals living in krill-dominated areas or those in fish-dominated areas. Twenty-two additional genomic regions under selection showed a pattern consistent with prey differences as the driver of selection after historical migrations from krill-dominated habitats where lineages evolved to present krill-poor habitat areas were taken into account. Only 1 of the genomic regions identified appeared to be explained by any other environmental variable analysed (depth). Genomic regions under prey-driven selection included genes associated with regulation of gene expression, skeletal development, and lipid metabolism. Adaptation to local prey has implications for spatial management of this species and for the potential impacts of climate- or harvest-driven reductions in krill abundance on these seals. KEY WORDS: Arctocephalus gazella · Double digest restriction-site associated DNA sequencing · ddRAD · Diet · Euphausia superba · Natural selection

Surface layer and upper-air in situ observations from two research vessel cruises and an ice station in the Weddell Sea from 1992 and 1996 are used to validate four current atmospheric reanalysis products: ERA-Interim, CFSR, JRA-55, and MERRA-2. Three of the observation data sets were not available for assimilation, providing a rare opportunity to validate the reanalyses in the otherwise datasparse region of the Antarctic against independent data. All four reanalyses produce 2 m temperatures warmer than the observations, and the biases vary from +2.0 K in CFSR to +2.8 K in MERRA-2. All four reanalyses are generally too warm also higher up in the atmospheric boundary layer (ABL), with biases up to +1.4 K (ERA-Interim). Cloud fractions are relatively poorly reproduced by the reanalyses, MERRA-2 and JRA-55 having the strongest positive and negative biases of about +30 % and −17 %, respectively. Skill scores of the error statistics reveal that ERA-Interim compares generally the most favorably against both the surface layer and the upper-air observations. CFSR compares the second best and JRA-55 and MERRA-2 have the least favorable scores. The ABL warm bias is consistent with previous evaluation studies in high latitudes, where more recent observations have been applied. As the amount of observations has varied depending on the decade, season, and region, the consistency of the warm bias suggests a need to improve the modeling systems, including data assimilation as well as ABL and surface parameterizations.

The intertidal fauna of the Antarctic Peninsula has a relatively high species diversity, due to its warmer environment compared to other parts of Antarctica. Marine oligochaetes are, in general, one of the most diverse and ecologically important benthic organism groups, at least in the littoral zone. Antarctica has been one of the least studied areas with regard to oligochaete diversity. Here we report two Lumbricillus species (Lumbricillus antarcticus Stephenson, 1932 and Lumbricillus sejongensis sp. nov.) new to Antarctica, found in a tidal pool on the Barton Peninsula, King George Island. The diversity of this genus remains poorly known for Antarctica and the Subantarctic islands, and what we know is based on a few patchy studies.

An object-based method for automatic iceberg detection has been applied to Advanced Synthetic Aperture Radar images in the Amundsen Sea Embayment (ASE), Antarctica. The images were acquired between 1 January 2006 and 8 April 2012 under varying meteorological, oceanographic and sea-ice conditions. During this time period, the icebergs were counted (average 1370 ± 50) and their surface area was estimated (average 1537.5 km2). The average surface area was about 2.5 times larger than the annual calved area (620 km2), indicating that the average iceberg age in the ASE is about 2.5 years, which was confirmed by observed residence times based on drift tracks. Most of the ASE icebergs were less than 1500 m long, and almost 90% of them were smaller than 2 km2. The proportion of small- and medium-sized icebergs (84.4%) was significantly higher than in the open ocean, where large icebergs (>10 km2) account for nearly the whole iceberg surface area. The opposite was true for the freshly calved icebergs in the ASE. The data indicate that the creation of icebergs in the ASE is dominated by steady small- to medium-scale calving from ice shelves fringing the embayment. In addition, rare calving events of giant icebergs occur on a decadal timescale. There is also some import of icebergs from the Bellingshausen Sea further east along the coast, in particular after large calving events there.

In the Southern Ocean, polynyas exhibit enhanced rates of primary productivity and represent large seasonal sinks for atmospheric CO2. Three contrasting east Antarctic polynyas were visited in late December to early January 2017: the Dalton, Mertz, and Ninnis polynyas. In the Mertz and Ninnis polynyas, phytoplankton biomass (average of 322 and 354 mg chlorophyll a (Chl a)/m2, respectively) and net community production (5.3 and 4.6 mol C/m2, respectively) were approximately 3 times those measured in the Dalton polynya (average of 122 mg Chl a/m2 and 1.8 mol C/m2). Phytoplankton communities also differed between the polynyas. Diatoms were thriving in the Mertz and Ninnis polynyas but not in the Dalton polynya, where Phaeocystis antarctica dominated. These strong regional differences were explored using physiological, biological, and physical parameters. The most likely drivers of the observed higher productivity in the Mertz and Ninnis were the relatively shallow inflow of iron-rich modified Circumpolar Deep Water onto the shelf as well as a very large sea ice meltwater contribution. The productivity contrast between the three polynyas could not be explained by (1) the input of glacial meltwater, (2) the presence of Ice Shelf Water, or (3) stratification of the mixed layer. Our results show that physical drivers regulate the productivity of polynyas, suggesting that the response of biological productivity and carbon export to future change will vary among polynyas.

Atmospheric CO2 concentrations (pCO2) varied on millennial timescales in phase with Antarctic temperature during the last glacial period. A prevailing view has been that carbon release and uptake by the Southern Ocean dominated this millennial-scale variability in pCO2. Here, using Earth System Model experiments with an improved parameterization of ocean vertical mixing, we find a major role for terrestrial and oceanic carbon releases in driving the pCO2 trend. In our simulations, a change in Northern Hemisphere insolation weakens the Atlantic Meridional Overturning Circulation (AMOC) leading to increasing pCO2 and Antarctic temperatures. The simulated rise in pCO2 is caused in equal parts by increased CO2 outgassing from the global ocean due to a reduced biological activity and changed ventilation rates, and terrestrial carbon release as a response to southward migration of the Intertropical Convergence Zone. The simulated terrestrial release of carbon could explain stadial declines in organic carbon reservoirs observed in recent ice core δ13C measurements. Our results show that parallel variations in Antarctic temperature and pCO2 do not necessitate that the Southern Ocean dominates carbon exchange; instead, changes in carbon flux from the global ocean and land carbon reservoirs can explain the observed pCO2 (and δ13C) changes.

Submarine groundwater discharge (SGD) measurements have been limited along the Antarctic coast, although groundwater discharge is becoming recognized as an important process in the Antarctic. Quantifying this meltwater pathway is important for hydrologic budgets, ice mass balances and solute delivery to the coastal ocean. Here, we estimate the combined discharge of subglacial and submarine groundwater to the Antarctic coastal ocean. SGD, including subglacial and submarine groundwater, is quantified along the WAP at the Marr Glacier terminus using the activities of naturally occurring radium isotopes (223Ra, 224Ra). Estimated SGD fluxes from a 224Ra mass balance ranged from (0.41 ± 0.14)×104 and (8.2 ± 2.3)×104m3 d−1. Using a salinity mass balance, we estimate SGD contributes up to 32% of the total freshwater to the coastal environment near Palmer Station. This study suggests that a large portion of the melting glacier may be infiltrating into the bedrock and being discharged to coastal waters along the WAP. Meltwater infiltrating as groundwater at glacier termini is an important solute delivery mechanism to the nearshore environment that can influence biological productivity. More importantly, quantifying this meltwater pathway may be worthy of attention when predicting future impacts of climate change on retreat of tidewater glaciers.