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Antarctic fur seal (Arctocephalus gazella) colonies are found on sub-Antarctic islands around the continent. These islands experience a range of conditions in terms of physical and biological habitat, creating a natural laboratory to investigate local genetic adaptation. One striking habitat difference is in the availability of Euphausia superba krill as prey, which has led to A. gazella exhibiting a range of diets. A. gazella in some colonies consume exclusively krill, while their conspecifics in other colonies feed mainly on fish and consume few to no krill. To investigate potential adaptations to these different prey fields, reduced representation genome sequencing was conducted on A. gazella from the 8 major colonies. Twenty-seven genomic regions exhibiting signatures of natural selection were identified. Two of these genomic regions were clearly associated with seals living in krill-dominated areas or those in fish-dominated areas. Twenty-two additional genomic regions under selection showed a pattern consistent with prey differences as the driver of selection after historical migrations from krill-dominated habitats where lineages evolved to present krill-poor habitat areas were taken into account. Only 1 of the genomic regions identified appeared to be explained by any other environmental variable analysed (depth). Genomic regions under prey-driven selection included genes associated with regulation of gene expression, skeletal development, and lipid metabolism. Adaptation to local prey has implications for spatial management of this species and for the potential impacts of climate- or harvest-driven reductions in krill abundance on these seals. KEY WORDS: Arctocephalus gazella · Double digest restriction-site associated DNA sequencing · ddRAD · Diet · Euphausia superba · Natural selection

Miniature electronic data recorders and transmitters have revolutionized the way we study animals over the past decades, particularly marine animals at sea. But, very recently, animal-borne instruments have also been designed and implemented that provide in situ hydrographic data from parts of the oceans where little or no other data are currently available (even from beneath the ice in polar regions). Ocean data is delivered from animal-borne instruments via satellites in near real-time, which would enrich the Global Ocean Observing System if animal-borne instruments were deployed systematically. In the last 10 years, studies involving more than 10 countries (Australia, Brazil, Canada, France, Germany, Greenland, Norway, South Africa, UK, USA) have demonstrated how highly accurate oceanographic sensors, integrated into standard animal, biologging instruments, can provide data of equal or better quality than XBT/XCTD data. Here, we present some of the pioneering studies and demonstrate that we now have enough information for many marine species to predict where they will go – within reasonable limits. Thus, we can direct sampling effort to particularly interesting and productive regions and maximize data return. In the future, biologging could certainly play an important part in the Global Ocean Observing System, by providing complementary data to more traditional sampling technologies - especially in the high latitudes. This paper will make a core contribution to the Plenary Sessions 4A, 4B and 5A and will be relevant to 2A, 2B and 3A.

Despite the exclusion of the Southern Ocean from assessments of progress towards achieving the Convention on Biological Diversity (CBD) Strategic Plan, the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) has taken on the mantle of progressing efforts to achieve it. Within the CBD, Aichi Target 11 represents an agreed commitment to protect 10% of the global coastal and marine environment. Adopting an ethos of presenting the best available scientific evidence to support policy makers, CCAMLR has progressed this by designating two Marine Protected Areas in the Southern Ocean, with three others under consideration. The region of Antarctica known as Dronning Maud Land (DML; 20°W to 40°E) and the Atlantic sector of the Southern Ocean that abuts it conveniently spans one region under consideration for spatial protection. To facilitate both an open and transparent process to provide the vest available scientific evidence for policy makers to formulate management options, we review the body of physical, geochemical and biological knowledge of the marine environment of this region. The level of scientific knowledge throughout the seascape abutting DML is polarized, with a clear lack of data in its eastern part which is presumably related to differing levels of research effort dedicated by national Antarctic programmes in the region. The lack of basic data on fundamental aspects of the physical, geological and biological nature of eastern DML make predictions of future trends difficult to impossible, with implications for the provision of management advice including spatial management. Finally, by highlighting key knowledge gaps across the scientific disciplines our review also serves to provide guidance to future research across this important region.

Over the last decade, several hundred seals have been equipped with conductivity-temperature-depth sensors in the Southern Ocean for both biological and physical oceanographic studies. A calibrated collection of seal-derived hydrographic data is now available, consisting of more than 165,000 profiles. The value of these hydrographic data within the existing Southern Ocean observing system is demonstrated herein by conducting two state estimation experiments, differing only in the use or not of seal data to constrain the system. Including seal-derived data substantially modifies the estimated surface mixed-layer properties and circulation patterns within and south of the Antarctic Circumpolar Current. Agreement with independent satellite observations of sea ice concentration is improved, especially along the East Antarctic shelf. Instrumented animals efficiently reduce a critical observational gap, and their contribution to monitoring polar climate variability will continue to grow as data accuracy and spatial coverage increase.

In recent years, the international “Southern Elephant seals as Oceanographic Samplers” (SEaOS) project has deployed miniaturized conductivity-temperature-depth satellite-relayed data loggers (CTD-SRDL) on elephant seals 1) to study their winter foraging ecology in relation to oceanographic conditions, and 2) to collect hydrographic data from polar regions, which are otherwise sparsely sampled. We summarize here the main results that have been published in both science components since 2003/2004. Instrumented southern elephant seals visit different regions within the Southern Ocean (frontal zones, continental shelf, and/or ice covered areas) and forage in a variety of different water masses (e.g. Circumpolar Deep Water upwelling regions, High Salinity Shelf Water), depending on their geographic distribution. Adult females and juvenile males from Kerguelen Is. forage pelagically in frontal zones of the Southern Indian Ocean, while adult males forage benthically over the Kerguelen Plateau and the Antarctic Continental Shelf, with the two groups feeding at different trophic levels as shown by stable isotopes analysis. Oceanographic studies using the data collected from the seals have, to date, concentrated on circumpolar and regional studies of the Antarctic Circumpolar Current (ACC) circulation. The temperature and salinity profiles documented by elephant seals at high latitudes, including below sea ice, have permitted quasi-circumpolar mapping of the southernmost fronts of the ACC. By merging conventional data and the high temporal and spatial resolution data collected by seal-borne SRDLs, it has been possible to describe precisely 1) the large-scale features of the ACC in the South Atlantic and its variability; 2) the circulation pattern over the Kerguelen plateau, revealing that the poorly known Fawn Trough concentrates an important proportion of the ACC flow in that region. Seals that foraged in ice covered areas have made eulerian time series available that have allowed for the estimation of sea ice formation rates, a parameter that is otherwise difficult to obtain, while also providing a unique description of the wintertime ocean circulation over the central Weddell Sea continental shelf. Finally, we present the first data collected by a newly-developed fluorescence sensor that as been embedded in the regular CTD-SRDL and deployed on elephant seals at Kerguelen. The fluorometer data obtained have offered the first synoptic view of the 3 dimensional distribution of temperature, salinity and fluorescence over a vast sector of the Southern Indian Ocean, allowing us to describe both vertical and horizontal variations in chlorophyll. This paper will make a core contribution to the Plenary Sessions 2C, 3A and 4A, and will be relevant to 2A and 2B.

Global warming is affecting the population dynamics and trophic interactions across a wide range of ecosystems and habitats. Translating these real-time effects into their long-term consequences remains a challenge. The rapid and extreme warming period that occurred after the Last Glacial Maximum (LGM) during the Pleistocene–Holocene transition (7–12 thousand years ago) provides an opportunity to gain insights into the long-term responses of natural populations to periods with global warming. The effects of this post-LGM warming period have been assessed in many terrestrial taxa, whereas insights into the impacts of rapid global warming on marine taxa remain limited, especially for megafauna. In order to understand how large-scale climate fluctuations during the post-LGM affected baleen whales and their prey, we conducted an extensive, large-scale analysis of the long-term effects of the post-LGM warming on abundance and inter-ocean connectivity in eight baleen whale and seven prey (fish and invertebrates) species across the Southern and the North Atlantic Ocean; two ocean basins that differ in key oceanographic features. The analysis was based upon 7032 mitochondrial DNA sequences as well as genome-wide DNA sequence variation in 100 individuals. The estimated temporal changes in genetic diversity during the last 30,000 years indicated that most baleen whale populations underwent post-LGM expansions in both ocean basins. The increase in baleen whale abundance during the Holocene was associated with simultaneous changes in their prey and climate. Highly correlated, synchronized and exponential increases in abundance in both baleen whales and their prey in the Southern Ocean were indicative of a dramatic increase in ocean productivity. In contrast, the demographic fluctuations observed in baleen whales and their prey in the North Atlantic Ocean were subtle, varying across taxa and time. Perhaps most important was the observation that the ocean-wide expansions and decreases in abundance that were initiated by the post-LGM global warming, continued for millennia after global temperatures stabilized, reflecting persistent, long-lasting impacts of global warming on marine fauna.

Southern Ocean ecosystems are under pressure from resource exploitation and climate change1,2. Mitigation requires the identification and protection of Areas of Ecological Significance (AESs), which have so far not been determined at the ocean-basin scale. Here, using assemblage-level tracking of marine predators, we identify AESs for this globally important region and assess current threats and protection levels. Integration of more than 4,000 tracks from 17 bird and mammal species reveals AESs around sub-Antarctic islands in the Atlantic and Indian Oceans and over the Antarctic continental shelf. Fishing pressure is disproportionately concentrated inside AESs, and climate change over the next century is predicted to impose pressure on these areas, particularly around the Antarctic continent. At present, 7.1% of the ocean south of 40°S is under formal protection, including 29% of the total AESs. The establishment and regular revision of networks of protection that encompass AESs are needed to provide long-term mitigation of growing pressures on Southern Ocean ecosystems.

The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.