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To assess the impact of human activities and other factors on the levels of highly toxic trace elements in the environment, the contents of eight highly toxic trace elements (arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn)) in feathers of 15 bird species from the Prydz Bay region in the Antarctic, Ny-Alsund region in the Arctic, and eastern China were evaluated in this study. Results showed that feathers collected from the Antarctic showed the highest As, Cu, and Hg contents (1.65–2.85, 9.58–18.56, and 4.77–8.76 μg/g dw, respectively) of the different study areas, whereas Arctic feathers exhibited the highest mean Pb levels (1.82–3.19 μg/g dw), and feathers from China showed significantly lower accumulations of Cr, Ni, Pb, and Zn compared with the other two areas. Overall, most of the studied highly toxic trace element contents in bird feathers from the densely populated and polluted area of eastern China were lower than those from remote polar regions, which are negligibly affected by human activities. In addition, feathers from the Arctic did not show higher highly toxic trace element contents than those of the more remote Antarctic. These results are thus inferred to reflect differences in the dietary structure of birds in the different habitats, as well as historical climate change. Carbon (δ13C) and nitrogen (δ15N) stable isotope ratios of feathers were also measured to evaluate the relationship between diet and highly toxic trace elements. Results showed that highly toxic trace element contents did not increase with increasing trophic levels. Moreover, the methylmercury content accounted for 87.57%–98.59% of the total mercury in all feather samples, regardless of location and species, confirming that most of the mercury entering the feathers is methylated. This finding suggests that the form of mercury changes during the process of transference from internal tissues to feathers, which improves our understanding of the mechanism by which feathers excrete mercury, this behavior greatly reduces the harm to bird health caused by mercury. This study confirms that measuring contaminants in feathers is a long-term and effective method for monitoring highly toxic trace elements pollution in particular environments, making future monitoring of highly toxic trace elements pollution in the polar regions, as well as more typical environments, more convenient.