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Antarctic fur seal (Arctocephalus gazella) colonies are found on sub-Antarctic islands around the continent. These islands experience a range of conditions in terms of physical and biological habitat, creating a natural laboratory to investigate local genetic adaptation. One striking habitat difference is in the availability of Euphausia superba krill as prey, which has led to A. gazella exhibiting a range of diets. A. gazella in some colonies consume exclusively krill, while their conspecifics in other colonies feed mainly on fish and consume few to no krill. To investigate potential adaptations to these different prey fields, reduced representation genome sequencing was conducted on A. gazella from the 8 major colonies. Twenty-seven genomic regions exhibiting signatures of natural selection were identified. Two of these genomic regions were clearly associated with seals living in krill-dominated areas or those in fish-dominated areas. Twenty-two additional genomic regions under selection showed a pattern consistent with prey differences as the driver of selection after historical migrations from krill-dominated habitats where lineages evolved to present krill-poor habitat areas were taken into account. Only 1 of the genomic regions identified appeared to be explained by any other environmental variable analysed (depth). Genomic regions under prey-driven selection included genes associated with regulation of gene expression, skeletal development, and lipid metabolism. Adaptation to local prey has implications for spatial management of this species and for the potential impacts of climate- or harvest-driven reductions in krill abundance on these seals. KEY WORDS: Arctocephalus gazella · Double digest restriction-site associated DNA sequencing · ddRAD · Diet · Euphausia superba · Natural selection

Species are likely to segregate their ecological niches to minimize competition for resources, but for centrally foraging predators that breed on sub-Antarctic islands in the Southern Ocean the possibility of niche segregation may be minimal. This study is the first to examine the spatial and trophic aspects of the foraging niche of sympatrically breeding macaroni and chinstrap penguins at the poorly-studied sub-Antarctic island Bouvetøya over multiple years. To measure at-sea movements and dive behavior, 90 breeding macaroni Eudyptes chrysolophus and 49 breeding chinstrap penguins Pygoscelis antarcticus were deployed with satellite transmitters and time-depth recorders over two austral summer breeding seasons, 2015 and 2018. In addition, tracked birds were sampled for blood for biogeochemical dietary analysis. Chinstrap penguins displayed large interannual variation in foraging behavior between the two years, and dove deeper, utilized larger foraging areas during late breeding stages and showed enriched values of δ15N in the first- compared to the second- year. Conversely, macaroni penguins dove to similar depths and displayed similar values of δ15N in both years. Our results suggest that potentially low krill abundances in the waters around Bouvetøya in 2015 forced the chinstrap penguins to search for alternative prey, like myctophid fishes, which resulted in increased overlap in the two species' foraging niche. Consequently, the chinstrap penguins may have faced increased interspecific competition for prey or catabolism from food shortage. Irrespective, our findings may partly explain the decreasing number of breeding chinstrap penguins at the world's most remote island, Bouvetøya.

Antarctic krill Euphausia superba are key components of Antarctic ecosystems, serving as the major prey item for most of the megafauna in the region. Coastal fjords along the West Antarctic Peninsula have been identified as biological hotspots, areas in which high biomasses of both E. superba and their megafauna predators are consistently observed. We investigated feeding by E. superba in fjords and adjacent open waters of the West Antarctic Peninsula. Next generation sequencing of stomach contents from 174 krill indicated a diverse diet, with broad patterns consistent with previous understanding of E. superba feeding. Diatom sequence reads were frequent and abundant, indicating a largely diatom-based diet, while the occasional presence of high abundances of copepod sequence reads suggests carnivory supplemented the diet. Striking differences were observed between the stomach contents of krill collected in fjords and those of krill collected in adjacent open waters. Chaetoceros spp. diatoms made up 71% of the stomach contents sequences of krill collected in fjords, but less than 10% of the stomach contents sequences of krill collected in open waters. These differences could not be explained by differences in the surface water phytoplankton communities, as in both open waters and fjords Chaetoceros spp. made up less than 10% of the surface water sequence read assemblages. These feeding differences highlight the importance of taking into account regional differences in krill feeding when considering E. superba’s roles in Southern Ocean ecosystems, and suggest krill in fjords may make use of vertical structure in phytoplankton assemblages.

The Rosenthal Islands lie along the western edge of the Antarctic Peninsula. They are largely inaccessible and the few research projects in the area have focused on seabird colonies, so nothing has been known about the arthropod fauna on these islands. We conducted a preliminary survey of the arthropods associated with large penguin colonies. We identified two species of Collembola (Cryptopygus antarcticus and Friesea grisea), four species of mites (Alaskozetes antarcticus, Hydrogamasellus racovitzai, Tectopenthalodes villosus and Rhagidia sp.) and one insect (Belgica antarctica). The mite A. antarcticus and the collembolan C. antarcticus were common in large aggregations at our collecting sites and were occasionally observed on the surface of penguin guano without vegetative cover. The insect, a chironomid midge, was less common and found only in vegetated areas.

The Antarctic petrel (Thalassoica antarctica) has been identified as a key species for monitoring the status and health of the Southern Ocean and Antarctic ecosystems. Breeding colonies of the Antarctic petrel are often found on isolated nunataks far from inhabited stations, some up to hundreds of kilometers from the shoreline. It is difficult therefore to monitor and census known colonies, and it is believed that undiscovered breeding locations remain to be found. We developed an algorithm that can detect Antarctic petrel colonies and used it to complete a continent-wide survey using Landsat-8 Operational Line Imager (OLI) imagery in Antarctica up to the southernmost extent of Landsat's orbital view at 82.68°S. Our survey successfully identified 8 known Antarctic petrel colonies containing 86% of the known population of Antarctic petrels. The survey also identified what appears to be a significant population of breeding birds in areas not known to host breeding Antarctic petrel colonies. Our survey suggests that the breeding population at Mt. Biscoe (66°13′S 51°21′E), currently reported to be in the 1000s, may actually be on the order of 400,000 breeding pairs, which would make it the largest known Antarctic petrel breeding colony in the world. The algorithm represents a first-ever attempt to apply satellite remote sensing to assess the distribution and abundance of the Antarctic petrel on a continent-wide basis. As such, we note several algorithm shortcomings and identify research topics for algorithm improvement. Even with these caveats, our algorithm for identifying Antarctic petrel colonies with Landsat imagery demonstrates the feasibility of monitoring their populations using satellite remote sensing and identifies breeding locations, including Mt. Biscoe, that should be considered high priorities for validation with directed field surveys.

Penguins are a monophyletic group in which many species are found breeding sympatrically, raising questions regarding how these species coexist successfully. Here, the isotopic niche of three sympatric pygoscelid penguin species was investigated at Powell Island, South Orkney Islands, during two breeding seasons (austral summers 2013–2014 and 2015–2016). Measurements of carbon (δ13C) and nitrogen (δ15N) stable isotope ratios were obtained from blood (adults) or feather (chicks) samples collected from Adélie Pygoscelis adeliae, chinstrap P. antarctica, and gentoo P. papua penguins. Isotopic niche regions (a proxy for the realized trophic niches) were computed to provide estimates of the trophic niche width of the studied species during the breeding season. The isotopic niche regions of adults of all three species were similar, but gentoo chicks had noticeably wider isotopic niches than the chicks of the other two species. Moderate to strong overlap in isotopic niche among species was found during each breeding season and for both age groups, suggesting that the potential for competition for shared food sources was similar during the two study years, although the actual level of competition could not be determined owing to the lack of data on resource abundance. Clear interannual shifts in isotopic niche were seen in all three species, though of lower amplitude for adult chinstrap penguins. These shifts were due to variation in carbon, but not nitrogen, isotopic ratios, which could indicate either a change in isotopic signature of their prey or a switch to an alternative food web. The main conclusions of this study are that (1) there is a partial overlap in the isotopic niches of these three congeneric species and that (2) they responded similarly to changes that likely occurred at the base of their food chain between the 2 years of the study.

Babesia spp. are tick-borne parasites, and 16 avian-infecting species have been described to date, including one species ( Babesia peircei ) that infects penguins. Considering the results of a recent study reporting Babesia sp. in penguins on Deception Island, South Shetland Islands, we re-examined the samples obtained in a previous investigation on the occurrence of blood parasites in adult Adélie ( Pygoscelis adeliae ), chinstrap ( Pygoscelis antarcticus ) and gentoo penguins ( Pygoscelis papua ) on King George and Elephant islands, South Shetland Islands. Notwithstanding a comprehensive re-examination of the blood smears, Babesia sp. was not detected. When we employed two nested PCR tests targeting the 18S rRNA gene of Babesia , a considerable proportion of the samples produced positive results; however, gene sequencing revealed these were due to cross-amplification of non-target organisms. We therefore did not detect Babesia sp. infection in penguins on King George and Elephant islands. Additional studies will be valuable to clarify the distribution and epidemiology of tick-borne pathogens in sub-Antarctic and Antarctic seabirds.

Using GC Orbitrap mass spectrometry to address analytical challenges with trace level detection of persistent organic pollutants in Antarctica.

Knowledge about parasitic organisms in Antarctica is scarce and fragmentary. The study reported here adds to the knowledge of gastrointestinal parasites of the Adélie penguin (Pygoscelis adeliae) (Sphenisciformes), from 25 de Mayo/King George Island (South Shetlands), Bahia Esperanza (Hope Bay) and Avian Island (Antarctica). Thirty-five freshly dead specimens (20 chicks and 15 adults) were collected from December 2007 to December 2014 and examined for internal macroparasites. Three adult parasite species were found: one Cestoda, Parorchites zederi, and two Nematoda, Stegophorus macronectes and Tetrameres sp. Immature Tetrabothrius sp. were found in hosts from Avian Island. Helminth communities are known to be related to host feeding behaviours. Low parasite richness observed in Adélie penguins could be related to the stenophagic and pelagic diet of this host species, which feeds almost exclusively on krill. Keywords: Parorchites zederi; Stegophorus macronectes; Tetrameres sp.; parasites; ecosystem health.

The koilin membrane, formed by the secretions of the ventricular and pyloric glands, functions as a protective layer in the gizzards of most bird species. However, the ecological functions of koilin have never been studied in free-ranging penguins. During the two austral summers from 2012 to 2014, we observed the regurgitated koilins of chinstrap penguins (Pygoscelis antarcticus) at Narębski Point on King George Island, South Shetland Islands, and we detected a significant difference in the daily accumulation of regurgitated koilins between the pre-hatching and post-hatching periods in the rookery. We also found 233 gastrointestinal parasites, all Stegophorus macronectes (Nematoda, Acuariidae), from 26 out of 45 koilins freshly regurgitated by chinstrap penguins. We suggest that the regurgitation of koilins may benefit adult chinstrap penguins in the wild by reducing parasitic loads when they fast during incubation; it may also help decrease the risk of parasite transmission to chicks. Our results present the first observations of regurgitated koilins among breeding chinstrap penguins. How koilin regurgitation functions in penguins requires further study. Among the gentoo penguins (P. papua) co-occurring at the study site, we observed no regurgitated koilin layers. Keywords: Cuticula gastris; host-parasite interaction; nematodes; parasitic load; regurgitation; Stegophorus macronectes.

The Antarctic fur seal (Arctocephalus gazella) is a key marine predator in the Southern Ocean, a region that has recently started to show changes as a result of global climate change. Here, carbon (δ 13 C) and nitrogen (δ 15 N) stable isotope analyses on whole blood and plasma samples were used to examine the isotopic niche of lactating female Antarctic fur seals. Using recently developed Bayesian approaches to determine changes in isotopic niche, a significant increase in δ 13 C and δ 15 N was found between 1997 and 2015; this change occurred at an average rate of 0.067‰ (δ 13 C) and 0.072‰ (δ 15 N) per year over this period. This suggests that a marked isotopic niche shift has occurred over this period, which very likely corresponds to a shift in diet towards prey at a higher trophic level, such as fish (replacing krill). Although our sampling design prevented us from exploring a seasonal trend in a conclusive manner, our data suggest that concurrent increases in δ 13 C and δ 15 N might occur as the breeding season progresses. At a seasonal scale, an average decrease of −0.7‰ per month (95% confidence interval=[−0.9; −0.6]) in δ 13 C might have occurred, concurrently with an average increase of 1.1‰ per month in δ 15 N. The results of this study constitute the first isotopic assessment for female Antarctic fur seals from Bouvetøya and provide a baseline for the use of this predator species as a sentinel of the marine trophic system in one of the least studied areas within this species' distributional range.

It is established that haematological and biochemical parameters provide important data to assess the physiological condition and health status of wild birds. To undertake conservation physiology or ecophysiology work, it is therefore essential to establish baseline physiological parameters and how these parameters change with age and life history events. In this work, we determined and compared baseline haematology and serum biochemistry between adults and chicks of three Antarctic penguin species of the genus Pygoscelis: gentoo (P. papua), Adélie (P. adeliae) and chinstrap (P. antarcticus). Differences in adults among species were observed in haemoglobin and biochemical parameters such as total proteins, glucose and alkaline phosphatase activity. In addition, differences between adults and chicks in haematocrit, haemoglobin, total proteins and glucose concentration were determined. Moreover, we evaluated the electrophoretic protein profiles between adults and chicks of the genus Pygoscelis, and a conserved protein pattern was observed among species and ages in the genus. Altogether, the results suggest that biochemical and haematological differences among pygoscelids may be related to the nutritional status and energetic expenditure during breeding as well as their feeding habits and development stage. Keywords: Antarctic; haematology; physiology; Pygoscelis; penguins; serum biochemistry.

The role of polychlorinated biphenyls (PCBs) on exposure-related endocrine effects has been poorly investigated in wild birds. This is the case for stress hormones including corticosterone (CORT). Some studies have suggested that environmental exposure to PCBs and altered CORT secretion might be associated. Here we investigated the relationships between blood PCB concentrations and circulating CORT levels in seven free-ranging polar seabird species occupying different trophic positions, and hence covering a wide range of PCB exposure. Blood ∑7PCB concentrations (range: 61–115,632 ng/g lw) were positively associated to baseline or stress-induced CORT levels in three species and negatively associated to stress-induced CORT levels in one species. Global analysis suggests that in males, baseline CORT levels generally increase with increasing blood ∑7PCB concentrations, whereas stress-induced CORT levels decrease when reaching high blood ∑7PCB concentrations. This study suggests that the nature of the PCB-CORT relationships may depend on the level of PCB exposure.

Seabirds often have high loads of contaminants. These contaminants have endocrine disrupting properties but their relationships with some endocrine mechanisms are still poorly investigated in free-living organisms. This is the case for the stress response which shifts energy investment away from reproduction and redirects it towards survival. In birds, this stress response is achieved through a release of corticosterone and is also accompanied by a decrease in circulating prolactin, an anterior pituitary hormone widely involved in regulating parental cares. We measured blood concentrations of some legacy persistent organic pollutants (POPs) and mercury (Hg) and examined their relationships with the corticosterone and prolactin responses of known-age (9–46years old) incubating snow petrels (Pagodroma nivea) to a standardized capture/handling stress protocol. In this Antarctic seabird, we also investigated whether high contaminant burden correlates with a higher occurrence of egg neglect, a frequently observed behavior in snow petrels. POPs and Hg were unrelated to age. Stress-induced corticosterone concentrations were positively related to POPs in both sexes, and stress-induced prolactin concentrations were negatively related to Hg in males. Egg-neglect behavior was not related to POPs burden, but males with higher Hg concentrations were more likely to neglect their egg. This suggests that in birds, relationships between age and contaminants are complex and that even low to moderate concentrations of POPs and Hg are significantly related to hormonal secretion. In this Antarctic species, exposure to legacy POPs and Hg could make individuals more susceptible to environmental stressors such as ongoing disturbances in Polar Regions.

Migratory routes and the areas used during winter have probably been selected to maximize fitness by providing favorable environmental conditions outside the breeding season. In polar environments, because of the extreme winter weather, most breeding species migrate to encounter better conditions in areas that can differ between and also within species. Using geolocation sensors, we found that south polar skuas Catharacta maccormicki from 2 distant populations breeding on the Antarctic continent along the Atlantic and Indian Oceans migrate northward to winter in tropical Indian Ocean and in temperate North Pacific waters, respectively. Most individuals from each population winter in different environmental conditions, with water temperatures ranging from 16 to 29°C. Nevertheless, they have very similar activity patterns, spending more than 80% of their time on the water, and their feather δ15N values suggest that they probably feed at similar trophic levels during the molt. During overwintering, the overall and constant low activity level may be partly imposed by molting constraints, but it also suggests that trophic conditions are good for skuas. The wintering areas of the species correspond to sectors of high concentrations of breeding or wintering tropical, Northern, and Southern Hemisphere seabird species that are likely to be kleptoparasitized by skuas. A certain degree of individual variation exists within each population, which induces a spatial overlap in the wintering grounds of distant breeding populations. These results have potential important consequences in terms of fitness, genetic divergence, and susceptibility to climate change and marine pollution. KEYWORDS: Catharacta maccormicki · Geolocators · Migration · Population-specific strategies · Stable isotopes.

Tests of biodiversity theory have been controversial partly because alternative formulations of the same theory seemingly yield different conclusions. This has been a particular challenge for neutral theory, which has dominated tests of biodiversity theory over the last decade. Neutral theory attributes differences in species abundances to chance variation in individuals’ fates, rather than differences in species traits. By identifying common features of different neutral models, we conduct a uniquely robust test of neutral theory across a global dataset of marine assemblages. Consistently, abundances vary more among species than neutral theory predicts, challenging the hypothesis that community dynamics are approximately neutral, and implicating species differences as a key driver of community structure in nature.Explaining patterns of commonness and rarity is fundamental for understanding and managing biodiversity. Consequently, a key test of biodiversity theory has been how well ecological models reproduce empirical distributions of species abundances. However, ecological models with very different assumptions can predict similar species abundance distributions, whereas models with similar assumptions may generate very different predictions. This complicates inferring processes driving community structure from model fits to data. Here, we use an approximation that captures common features of “neutral” biodiversity models—which assume ecological equivalence of species—to test whether neutrality is consistent with patterns of commonness and rarity in the marine biosphere. We do this by analyzing 1,185 species abundance distributions from 14 marine ecosystems ranging from intertidal habitats to abyssal depths, and from the tropics to polar regions. Neutrality performs substantially worse than a classical nonneutral alternative: empirical data consistently show greater heterogeneity of species abundances than expected under neutrality. Poor performance of neutral theory is driven by its consistent inability to capture the dominance of the communities’ most-abundant species. Previous tests showing poor performance of a neutral model for a particular system often have been followed by controversy about whether an alternative formulation of neutral theory could explain the data after all. However, our approach focuses on common features of neutral models, revealing discrepancies with a broad range of empirical abundance distributions. These findings highlight the need for biodiversity theory in which ecological differences among species, such as niche differences and demographic trade-offs, play a central role.

The Artotrogidae, one of the most primitive of siphonostomatoid families, consists currently of 117 species in 21 genera. Most of these species (65%) are poorly or incompletely described since they have been rarely recorded in recent decades and, when encountered, have been found in very low numbers. During the 19th Italian Antarctic Expedition, with the RV Italica, to the Ross Sea in austral summer 2004, some artotrogid copepods were collected. This paper redescribes two species of artotrogid copepods, which are known only from the Southern Ocean, Neobradypontius neglectus and Cryptopontiuslatus, and describes for the first time a male of the genus Neobradypontius. Furthermore, a new species is described and added to Sestropontius, increasing the number of known species of this genus to three. The main discrepancies between the original descriptions and the specimens of the two species collected from the Ross Sea redescribed here were on the armature of the antennary exopod and leg 5. The new species, Sestropontius italicae, shares with its most similar congener, S. mckinnoni, the armature of the third endopodal segment of leg 1 and leg 2 and that of the third exopodal segment of leg 4. However, the segmentation of the antennae and the armature on the antennary exopod are different. Keywords: Antarctica; Artotrogidae; redescription; Neobradypontius; Sestropontius; Cryptopontius.