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Increased knowledge about marine mammal seasonal distribution and species assemblage from the South Orkney Islands waters is needed for the development of management regulations of the commercial fishery for Antarctic krill (Euphausia superba) in this region. Passive acoustic monitoring (PAM) data were collected during the autumn and winter seasons in two consecutive years (2016, 2017), which represented highly contrasting environmental conditions due to the 2016 El Niño event. We explored differences in seasonal patterns in marine mammal acoustic presence between the two years in context of environmental cues and climate variability. Acoustic signals from five baleen whale species, two pinniped species and odontocete species were detected and separated into guilds. Although species diversity remained stable over time, the ice-avoiding and ice-affiliated species dominated before and after the onset of winter, respectively, and thus demonstrating a shift in guild composition related to season. Herein, we provide novel information about local marine mammal species diversity, community structure and residency times in a krill hotspot. Our study also demonstrates the utility of PAM data and its usefulness in providing new insights into the marine mammal habitat use and responses to environmental conditions, which are essential knowledge for the future development of a sustainable fishery management in a changing ecosystem.

The rapid diversification of notothenioid fishes in the waters surrounding the Antarctic continent is a prime example of the process of adaptive radiation. Within around 10 million years, Antarctic notothenioids have diversified into over 100 species with a broad range of lifestyles and ecological adaptations. However, the exact number of species within this radiation has long been unclear. Particularly challenging is the taxonomy of the genus Channichthys, for which between one and nine species have been recognized by different authors. The putative species from this genus are known from a limited number of representative specimens, of which most were sampled decades ago. Here, we investigated the mitochondrial genomes of museum specimens representing the four recently recognized species Unicorn Icefish (C. rhinoceratus), Red Icefish (C. rugosus), Sailfish Pike (C. velifer), and Charcoal Icefish (C. panticapaei), complemented by morphological analyses. All analyzed specimens were collected in the 1960s and 1970s and fixed in formaldehyde, and their DNA has thus been heavily degraded. Applying ancient-DNA protocols for DNA extraction and single-stranded library preparation, we were nevertheless able to obtain sufficient endogenous DNA to reconstruct the mitochondrial genomes of one specimen of each species. These mitochondrial genome sequences were nearly identical for the three specimens assigned to Unicorn Icefish, Red Icefish, and Sailfish Pike, while greater mitochondrial divergence was observed for the Charcoal Icefish specimens. We discuss possible explanations of the contrast between these molecular results and the recognizable morphological variation found among the four species, and recommend that at least the Charcoal Icefish be included the list of valid icefish and notothenioid species.Competing Interest StatementThe authors have declared no competing interest.

Numerous novel adaptations characterise the radiation of notothenioids, the dominant fish group in the freezing seas of the Southern Ocean. To improve understanding of the evolution of this iconic fish group, here we generate and analyse new genome assemblies for 24 species covering all major subgroups of the radiation, including five long-read assemblies. We present a new estimate for the onset of the radiation at 10.7 million years ago, based on a time-calibrated phylogeny derived from genome-wide sequence data. We identify a two-fold variation in genome size, driven by expansion of multiple transposable element families, and use the long-read data to reconstruct two evolutionarily important, highly repetitive gene family loci. First, we present the most complete reconstruction to date of the antifreeze glycoprotein gene family, whose emergence enabled survival in sub-zero temperatures, showing the expansion of the antifreeze gene locus from the ancestral to the derived state. Second, we trace the loss of haemoglobin genes in icefishes, the only vertebrates lacking functional haemoglobins, through complete reconstruction of the two haemoglobin gene clusters across notothenioid families. Both the haemoglobin and antifreeze genomic loci are characterised by multiple transposon expansions that may have driven the evolutionary history of these genes.

Individual heterogeneity in foraging behaviour determines how individuals and populations respond to changes in the availability and distribution of resources. Antarctic krill Euphausia superba is a pivotal species in Southern Ocean food webs and an important target for Southern Ocean fisheries. Changes in its abundance could dramatically impact marine predators, with effects depending on the extent to which all individuals rely on krill as prey. The Antarctic petrel Thalassoica antarctica is a high latitude seabird thought to be dependent on krill in part of its breeding range. Here, by combining fine-scale GPS tracking of petrel foraging trips with diet data, we examined the level and consistency of inter-individual variation in foraging strategies in breeding Antarctic petrels in Dronning Maud Land, Antarctica, and assessed whether all individuals share a similar reliance on Antarctic krill. We found that Antarctic petrels showed high levels of repeatability in their diet and foraging movements at sea, indicating consistent individual differences in foraging strategies. During consecutive foraging trips, petrels tend to make trips of similar lengths and durations to reach similar terminal locations and to feed on similar prey. These individual differences in diet were spatially structured, with individuals travelling towards the west consuming a more fish-based diet. These different foraging tactics did not appear to be associated with different costs and/or benefits as adult body mass, chick survival and chick growth were unrelated to birds’ foraging movements and diet. Our results show that, even if a large part of the population may be dependent on krill, some individuals specialize on fish. Such inter-individual variation in foraging suggests that this population could be more resilient to changes in the marine environment, such as a decline in krill abundance or a shift in krill distributions.

For procellariiform seabirds, wind and morphology are crucial determinants of flight costs and flight speeds. During chick-rearing, parental seabirds commute frequently to provision their chicks, and their body mass typically changes between outbound and return legs. In Antarctica, the characteristic diurnal katabatic winds, which blow stronger in the mornings, form a natural experimental setup to investigate flight behaviors of commuting seabirds in response to wind conditions. We GPS-tracked three closely related species of sympatrically breeding Antarctic fulmarine petrels, which differ in wing loading and aspect ratio, and investigated their flight behavior in response to wind and changes in body mass. Such information is critical for understanding how species may respond to climate change. All three species reached higher ground speeds (i.e., the speed over ground) under stronger tailwinds, especially on return legs from foraging. Ground speeds decreased under stronger headwinds. Antarctic petrels (Thalassoica antarctica; intermediate body mass, highest wing loading, and aspect ratio) responded stronger to changes in wind speed and direction than cape petrels (Daption capense; lowest body mass, wing loading, and aspect ratio) or southern fulmars (Fulmarus glacialoides; highest body mass, intermediate wing loading, and aspect ratio). Birds did not adjust their flight direction in relation to wind direction nor the maximum distance from their nests when encountering headwinds on outbound commutes. However, birds appeared to adjust the timing of commutes to benefit from strong katabatic winds as tailwinds on outbound legs and avoid strong katabatic winds as headwinds on return legs. Despite these adaptations to the predictable diurnal wind conditions, birds frequently encountered unfavorably strong headwinds, possibly as a result of weather systems disrupting the katabatics. How the predicted decrease in Antarctic near-coastal wind speeds over the remainder of the century will affect flight costs and breeding success and ultimately population trajectories remains to be seen.

Ecological niche theory predicts sympatric species to show segregation in their spatio-temporal habitat utilization or diet as a strategy to avoid competition. Similarly, within species individuals may specialize on specific dietary resources or foraging habitats. Such individual specialization seems to occur particularly in environments with predictable resource distribution and limited environmental variability. Still, little is known about how seasonal environmental variability affects segregation of resources within species and between closely related sympatric species. The aim of the study was to investigate the foraging behaviour of three closely related and sympatrically breeding fulmarine petrels (Antarctic petrels Thalassoica antarctica, cape petrels Daption capense and southern fulmars Fulmarus glacialoides) in a seasonally highly variable environment (Prydz Bay, Antarctica) with the aim of assessing inter- and intraspecific overlap in utilized habitat, timing of foraging and diet and to identify foraging habitat preferences. We used GPS loggers with wet/dry sensors to assess spatial habitat utilization over the entire breeding season. Trophic overlap was investigated using stable isotope analysis based on blood, feathers and egg membranes. Foraging locations were identified using wet/dry data recorded by the GPS loggers and expectation-maximization binary clustering. Foraging habitat preferences were modelled using generalized additive models and model cross-validation. During incubation and chick-rearing, the utilization distribution of all three species overlapped significantly and species also overlapped in the timing of foraging during the day—partly during incubation and completely during chick-rearing. Isotopic centroids showed no significant segregation between at least two species for feathers and egg membranes, and among all species during incubation (reflected by blood). Within species, there was no individual specialization in foraging sites or environmental space. Furthermore, no single environmental covariate predicted foraging activity along trip trajectories. Instead, best-explanatory environmental covariates varied within and between individuals even across short temporal scales, reflecting a highly generalist behaviour of birds. Our results may be explained by optimal foraging theory. In the highly productive but spatio-temporally variable Antarctic environment, being a generalist may be key to finding mobile prey—even though this increases the potential for competition within and among sympatric species.

The salt gland is a well-developed osmoregulation organ in marine birds, and its relative size often reflects an individual’s feeding environment and osmoregulation capability. The development and functions of salt glands have been described for the Adélie penguin (Pygoscelis adeliae), but this information has been poorly documented in the other two pygoscelid species: gentoo (P. papua) and chinstrap penguins (P. antarcticus). To describe the growth-related changes in salt gland masses in relation to chick growth, we measured the wet mass of the salt glands collected from dead gentoo and chinstrap chicks during the early breeding period. The mass of the salt glands was linearly proportional to their body measurements, especially to body mass, in both species, and no significant difference was detected between the two species. Penguins are obligate marine dwellers throughout their life cycle, and the development of the salt gland in penguin chicks suggests that their ability to regulate dietary osmotic stress begins at an early stage of development after hatching. Furthermore, the linear relationship between the gland mass and body mass also suggests that the osmoregulation capability may continue to develop as penguin chicks grow. This descriptive note provides novel and quantitative information on the early developmental pattern of salt glands in gentoo and chinstrap penguins.

A new species of nephropid lobster, Hoploparia echinata sp. nov., from the James Ross Island in the Antarctic Peninsula is here described and illustrated. The material was collected in the Santa Marta Formation (Santonian–-Campanian), the basal unit of the Marambio Group, Larsen Basin, located in the western portion of the Antarctic Peninsula. Hoploparia echinata sp. nov. can easily be differentiated from its congeners by the presence of distinct short spines on dorsal and ventral margins on the third maxillipeds, merus of the chelipeds and pereopods; these are the characters not described in other Hoploparia species so far.

Abstract Individual heterogeneity in diet and foraging behaviour is common in wild animal populations, and can be a strong determinant of how populations respond to environmental changes. Within populations, variation in foraging behaviour and the occurrence of individual tactics in relation to resources distribution can help explain differences in individual fitness, and ultimately identify important factors affecting population dynamics. We examined how foraging behaviour and habitat during the breeding period related to the physiological state of a long-ranging seabird adapted to sea ice, the Antarctic petrel Thalassoica antarctica. Firstly, using GPS tracking and state-switching movement modelling (hidden Markov models) on 124 individual birds, we tested for the occurrence of distinct foraging tactics within our study population. Our results highlight a large variation in the movement and foraging behaviour of a very mobile seabird, and delineate distinct foraging tactics along a gradient from foraging in dense pack ice to foraging in open water. Secondly, we investigated the effects of these foraging tactics on individual state at return from a foraging trip. We combined movement data with morphometric and physiological measurements of a suite of plasma metabolites that provided a general picture of a bird's individual state. Foraging in denser sea ice was associated with lower gain in body mass during brooding, as well as lower level of energy acquisition (plasma triacylglycerol) during both brooding and incubation. We found no clear relationship between the foraging tactic in relation to sea ice and the energetic stress (changes in plasma corticosterone), energetic balance (β-hydroxybutyrate) or trophic level (δ15N). However, a shorter foraging range was related to both the energetic balance (positively) and the trophic level (negatively). Our results highlight a diverse range of foraging tactics in relation to sea ice in Antarctic petrels. While the various foraging tactics do not seem to strongly alter energetic balance, they may affect other aspects of Antarctic petrels' physiology. Future changes in sea-ice habitats can thus be expected to have an impact on the individual state of seabirds such as Antarctic petrels, which could ultimately affect their population dynamics. Nonetheless, strong individual heterogeneity in the use of sea-ice habitats by a typical pagophilic species might strengthen its resilience to environmental changes and in particular to forecasted sea-ice loss. A free Plain Language Summary can be found within the Supporting Information of this article.

Antarctic fur seal (Arctocephalus gazella) colonies are found on sub-Antarctic islands around the continent. These islands experience a range of conditions in terms of physical and biological habitat, creating a natural laboratory to investigate local genetic adaptation. One striking habitat difference is in the availability of Euphausia superba krill as prey, which has led to A. gazella exhibiting a range of diets. A. gazella in some colonies consume exclusively krill, while their conspecifics in other colonies feed mainly on fish and consume few to no krill. To investigate potential adaptations to these different prey fields, reduced representation genome sequencing was conducted on A. gazella from the 8 major colonies. Twenty-seven genomic regions exhibiting signatures of natural selection were identified. Two of these genomic regions were clearly associated with seals living in krill-dominated areas or those in fish-dominated areas. Twenty-two additional genomic regions under selection showed a pattern consistent with prey differences as the driver of selection after historical migrations from krill-dominated habitats where lineages evolved to present krill-poor habitat areas were taken into account. Only 1 of the genomic regions identified appeared to be explained by any other environmental variable analysed (depth). Genomic regions under prey-driven selection included genes associated with regulation of gene expression, skeletal development, and lipid metabolism. Adaptation to local prey has implications for spatial management of this species and for the potential impacts of climate- or harvest-driven reductions in krill abundance on these seals. KEY WORDS: Arctocephalus gazella · Double digest restriction-site associated DNA sequencing · ddRAD · Diet · Euphausia superba · Natural selection

Antarctic krill Euphausia superba are key components of Antarctic ecosystems, serving as the major prey item for most of the megafauna in the region. Coastal fjords along the West Antarctic Peninsula have been identified as biological hotspots, areas in which high biomasses of both E. superba and their megafauna predators are consistently observed. We investigated feeding by E. superba in fjords and adjacent open waters of the West Antarctic Peninsula. Next generation sequencing of stomach contents from 174 krill indicated a diverse diet, with broad patterns consistent with previous understanding of E. superba feeding. Diatom sequence reads were frequent and abundant, indicating a largely diatom-based diet, while the occasional presence of high abundances of copepod sequence reads suggests carnivory supplemented the diet. Striking differences were observed between the stomach contents of krill collected in fjords and those of krill collected in adjacent open waters. Chaetoceros spp. diatoms made up 71% of the stomach contents sequences of krill collected in fjords, but less than 10% of the stomach contents sequences of krill collected in open waters. These differences could not be explained by differences in the surface water phytoplankton communities, as in both open waters and fjords Chaetoceros spp. made up less than 10% of the surface water sequence read assemblages. These feeding differences highlight the importance of taking into account regional differences in krill feeding when considering E. superba’s roles in Southern Ocean ecosystems, and suggest krill in fjords may make use of vertical structure in phytoplankton assemblages.

The Rosenthal Islands lie along the western edge of the Antarctic Peninsula. They are largely inaccessible and the few research projects in the area have focused on seabird colonies, so nothing has been known about the arthropod fauna on these islands. We conducted a preliminary survey of the arthropods associated with large penguin colonies. We identified two species of Collembola (Cryptopygus antarcticus and Friesea grisea), four species of mites (Alaskozetes antarcticus, Hydrogamasellus racovitzai, Tectopenthalodes villosus and Rhagidia sp.) and one insect (Belgica antarctica). The mite A. antarcticus and the collembolan C. antarcticus were common in large aggregations at our collecting sites and were occasionally observed on the surface of penguin guano without vegetative cover. The insect, a chironomid midge, was less common and found only in vegetated areas.

The Antarctic petrel (Thalassoica antarctica) has been identified as a key species for monitoring the status and health of the Southern Ocean and Antarctic ecosystems. Breeding colonies of the Antarctic petrel are often found on isolated nunataks far from inhabited stations, some up to hundreds of kilometers from the shoreline. It is difficult therefore to monitor and census known colonies, and it is believed that undiscovered breeding locations remain to be found. We developed an algorithm that can detect Antarctic petrel colonies and used it to complete a continent-wide survey using Landsat-8 Operational Line Imager (OLI) imagery in Antarctica up to the southernmost extent of Landsat's orbital view at 82.68°S. Our survey successfully identified 8 known Antarctic petrel colonies containing 86% of the known population of Antarctic petrels. The survey also identified what appears to be a significant population of breeding birds in areas not known to host breeding Antarctic petrel colonies. Our survey suggests that the breeding population at Mt. Biscoe (66°13′S 51°21′E), currently reported to be in the 1000s, may actually be on the order of 400,000 breeding pairs, which would make it the largest known Antarctic petrel breeding colony in the world. The algorithm represents a first-ever attempt to apply satellite remote sensing to assess the distribution and abundance of the Antarctic petrel on a continent-wide basis. As such, we note several algorithm shortcomings and identify research topics for algorithm improvement. Even with these caveats, our algorithm for identifying Antarctic petrel colonies with Landsat imagery demonstrates the feasibility of monitoring their populations using satellite remote sensing and identifies breeding locations, including Mt. Biscoe, that should be considered high priorities for validation with directed field surveys.

Penguins are a monophyletic group in which many species are found breeding sympatrically, raising questions regarding how these species coexist successfully. Here, the isotopic niche of three sympatric pygoscelid penguin species was investigated at Powell Island, South Orkney Islands, during two breeding seasons (austral summers 2013–2014 and 2015–2016). Measurements of carbon (δ13C) and nitrogen (δ15N) stable isotope ratios were obtained from blood (adults) or feather (chicks) samples collected from Adélie Pygoscelis adeliae, chinstrap P. antarctica, and gentoo P. papua penguins. Isotopic niche regions (a proxy for the realized trophic niches) were computed to provide estimates of the trophic niche width of the studied species during the breeding season. The isotopic niche regions of adults of all three species were similar, but gentoo chicks had noticeably wider isotopic niches than the chicks of the other two species. Moderate to strong overlap in isotopic niche among species was found during each breeding season and for both age groups, suggesting that the potential for competition for shared food sources was similar during the two study years, although the actual level of competition could not be determined owing to the lack of data on resource abundance. Clear interannual shifts in isotopic niche were seen in all three species, though of lower amplitude for adult chinstrap penguins. These shifts were due to variation in carbon, but not nitrogen, isotopic ratios, which could indicate either a change in isotopic signature of their prey or a switch to an alternative food web. The main conclusions of this study are that (1) there is a partial overlap in the isotopic niches of these three congeneric species and that (2) they responded similarly to changes that likely occurred at the base of their food chain between the 2 years of the study.

Babesia spp. are tick-borne parasites, and 16 avian-infecting species have been described to date, including one species ( Babesia peircei ) that infects penguins. Considering the results of a recent study reporting Babesia sp. in penguins on Deception Island, South Shetland Islands, we re-examined the samples obtained in a previous investigation on the occurrence of blood parasites in adult Adélie ( Pygoscelis adeliae ), chinstrap ( Pygoscelis antarcticus ) and gentoo penguins ( Pygoscelis papua ) on King George and Elephant islands, South Shetland Islands. Notwithstanding a comprehensive re-examination of the blood smears, Babesia sp. was not detected. When we employed two nested PCR tests targeting the 18S rRNA gene of Babesia , a considerable proportion of the samples produced positive results; however, gene sequencing revealed these were due to cross-amplification of non-target organisms. We therefore did not detect Babesia sp. infection in penguins on King George and Elephant islands. Additional studies will be valuable to clarify the distribution and epidemiology of tick-borne pathogens in sub-Antarctic and Antarctic seabirds.