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Temporal distributions of Antarctic krill (Euphausia superba) density and aggregation types were characterized and compared using Nortek Signature100 and SIMRAD Wideband Autonomous Transceiver (WBAT) upward-looking echosounders. Noise varied between the two echosounders. With the Signature100, it was necessary to correct data for background, transient, and impulse noises, while the WBAT data needed to be corrected for background noise only. For selected regions with no visible backscatter, the signal-to-noise ratio of Sv values (i.e. the ratio between the signal and the background noise level) did not vary between the two echosounders. Surface echo backscatter was similar during similar time periods. Descriptive metrics were used to quantify spatial and temporal krill vertical distributions: volume backscatter, mean depth, center of mass, inertia, equivalent area, aggregation index, and proportion occupied. Krill backscatter density differed between the two instruments but was detected at similar mean depths. Krill aggregations were identified at each mooring location and classified in three types based on morphological characteristics. Each type of aggregation shape differed at the two spatially separated moorings, while the acoustic density of each aggregation type was similar. The Signature100 detected a lower number of krill aggregations (n = 133) compared to the WBAT (n = 707). Although both instruments can be used for autonomous deployment and sampling of krill over extended periods, there is a strong caveat for the use of the Signature100 due to significant differences in noise characteristics and krill detection.

Diving patterns of air-breathing predators were monitored from three moored subsurface upward-looking echosounders. Complete and partial dive profiles were visible on active acoustic records as echoes that started and/or returned to the surface. Dive metrics: maximum dive depths, durations, and wiggle count were measured and angles, distances, and velocities, were calculated at each site. Dive shapes ‘U’, ‘V’ and ‘W’ were derived using the number of wiggles and the percentage of dive bottom time. Dive profiles were classified into four types with type 1 dives being short in total duration and distance, low velocities, small angles, shallow, and linked to ‘U’ and ‘W’ shapes. Type 2 dives were short in distance, had low velocities, shallow depths, and were linked to ‘V’ dives. Dive types 3 and 4 had higher velocities, larger angles, longer total durations, and were deeper than types 1 and 2. Observed dive types could correspond to travelling, exploring, and foraging predator behaviors. Significant predator-prey overlaps occurred with predator dive profile counts correlated with krill aggregation thickness, density, and depth. This study demonstrates the utility of using stationary active acoustics to identify predator dive profiles with a simultaneous characterization of the potential prey field.

Increased knowledge about marine mammal seasonal distribution and species assemblage from the South Orkney Islands waters is needed for the development of management regulations of the commercial fishery for Antarctic krill (Euphausia superba) in this region. Passive acoustic monitoring (PAM) data were collected during the autumn and winter seasons in two consecutive years (2016, 2017), which represented highly contrasting environmental conditions due to the 2016 El Niño event. We explored differences in seasonal patterns in marine mammal acoustic presence between the two years in context of environmental cues and climate variability. Acoustic signals from five baleen whale species, two pinniped species and odontocete species were detected and separated into guilds. Although species diversity remained stable over time, the ice-avoiding and ice-affiliated species dominated before and after the onset of winter, respectively, and thus demonstrating a shift in guild composition related to season. Herein, we provide novel information about local marine mammal species diversity, community structure and residency times in a krill hotspot. Our study also demonstrates the utility of PAM data and its usefulness in providing new insights into the marine mammal habitat use and responses to environmental conditions, which are essential knowledge for the future development of a sustainable fishery management in a changing ecosystem.

The rapid diversification of notothenioid fishes in the waters surrounding the Antarctic continent is a prime example of the process of adaptive radiation. Within around 10 million years, Antarctic notothenioids have diversified into over 100 species with a broad range of lifestyles and ecological adaptations. However, the exact number of species within this radiation has long been unclear. Particularly challenging is the taxonomy of the genus Channichthys, for which between one and nine species have been recognized by different authors. The putative species from this genus are known from a limited number of representative specimens, of which most were sampled decades ago. Here, we investigated the mitochondrial genomes of museum specimens representing the four recently recognized species Unicorn Icefish (C. rhinoceratus), Red Icefish (C. rugosus), Sailfish Pike (C. velifer), and Charcoal Icefish (C. panticapaei), complemented by morphological analyses. All analyzed specimens were collected in the 1960s and 1970s and fixed in formaldehyde, and their DNA has thus been heavily degraded. Applying ancient-DNA protocols for DNA extraction and single-stranded library preparation, we were nevertheless able to obtain sufficient endogenous DNA to reconstruct the mitochondrial genomes of one specimen of each species. These mitochondrial genome sequences were nearly identical for the three specimens assigned to Unicorn Icefish, Red Icefish, and Sailfish Pike, while greater mitochondrial divergence was observed for the Charcoal Icefish specimens. We discuss possible explanations of the contrast between these molecular results and the recognizable morphological variation found among the four species, and recommend that at least the Charcoal Icefish be included the list of valid icefish and notothenioid species.Competing Interest StatementThe authors have declared no competing interest.

Background: Plankton is the essential ecological category that occupies the lower levels of aquatic trophic networks, representing a good indicator of environmental change. However, most studies deal with distribution of single spe- cies or taxa and do not take into account the complex of biological interactions of the real world that rule the ecologi- cal processes. Results: This study focused on analyzing Antarctic marine phytoplankton, mesozooplankton, and microzooplankton, examining their biological interactions and co-existences. Field data yielded 1053 biological interaction values, 762 coexistence values, and 15 zero values. Six phytoplankton assemblages and six copepod species were selected based on their abundance and ecological roles. Using 23 environmental descriptors, we modelled the distribution of taxa to accurately represent their occurrences. Sampling was conducted during the 2016–2017 Italian National Antarctic Programme (PNRA) ‘P-ROSE’ project in the East Ross Sea. Machine learning techniques were applied to the occurrence data to generate 48 predictive species distribution maps (SDMs), producing 3D maps for the entire Ross Sea area. These models quantitatively predicted the occurrences of each copepod and phytoplankton assemblage, providing crucial insights into potential variations in biotic and trophic interactions, with significant implications for the man- agement and conservation of Antarctic marine resources. The Receiver Operating Characteristic (ROC) results indi- cated the highest model efficiency, for Cyanophyta (74%) among phytoplankton assemblages and Paralabidocera antarctica (83%) among copepod communities. The SDMs revealed distinct spatial heterogeneity in the Ross Sea area, with an average Relative Index of Occurrence values of 0.28 (min: 0; max: 0.65) for phytoplankton assemblages and 0.39 (min: 0; max: 0.71) for copepods. Conclusion: The results of this study are essential for a science-based management for one of the world’s most pris- tine ecosystems and addressing potential climate-induced alterations in species interactions. Our study emphasizes the importance of considering biological interactions in planktonic studies, employing open access and machine learning for measurable and repeatable distribution modelling, and providing crucial ecological insights for informed conservation strategies in the face of environmental change.

Southern Ocean phytoplankton form the base of the Antarctic food web, influencing higher trophic levels through biomass and community structure. We examined phytoplankton distribution and abundance in the Indian Sector of the Southern Ocean during austral summer as part a multidisciplinary ecosystem survey: Trends in Euphausiids off Mawson, Predators and Oceanography (TEMPO, 2021). Sampling covered six meridional transects from 55-80°E, and from 62°S or 63°S to the ice edge. To determine phytoplankton groups, CHEMTAX analysis was undertaken on pigments measured using HPLC. Diatoms were the dominant component of phytoplankton communities, explaining 56% of variation in chlorophyll a (Chl a), with haptophytes also being a major component. Prior to sampling the sea ice had retreated in a south-westerly direction, leading to shorter ice-free periods in the west (< 44 days, ≤65°E) compared to east (> 44 days, ≥70°E), inducing a strong seasonal effect. The east was nutrient limited, indicated by low-iron forms of haptophytes, and higher silicate:nitrate drawdown ratios (5.1 east vs 4.3 west), pheophytin a (phaeo) concentrations (30.0 vs 18.4 mg m-2) and phaeo:Chl a ratios (1.06 vs 0.53). Biological influences were evident at northern stations between 75-80°E, where krill “super-swarms” and feeding whales were observed. Here, diatoms were depleted from surface waters likely due to krill grazing, as indicated by high phaeo:Chl a ratios (> 0.75), and continued presence of haptophytes, associated with inefficient filtering or selective grazing by krill. Oceanographic influences included deeper mixed layers reducing diatom biomass, and a bloom to the north of the southern Antarctic Circumpolar Current Front in the western survey area thought to be sinking as waters flowed from west to east. Haptophytes were influenced by the Antarctic Slope Front with high-iron forms prevalent to the south only, showing limited iron transfer from coastal waters. Cryptophytes were associated with meltwater, and greens (chlorophytes + prasinophytes) were prevalent below the mixed layer. The interplay of seasonal, biological and oceanographic influences on phytoplankton populations during TEMPO had parallels with processes observed in the BROKE and BROKE-West voyages conducted 25 and 15 years earlier, respectively. Our research consolidates understanding of the krill ecosystem to ensure sustainable management in East Antarctic waters.

The ongoing global climate crisis increases temperatures in polar regions faster and with greater magnitude than elsewhere. The decline of Arctic sea ice opens up new passages, eventually leading to higher anthropogenic activities such as shipping, fishing, and mining. Climate change and anthropogenic activities will increase contaminant transport from temperate to Arctic regions. The shipping industry uses copper as an antifouling coating. Copper is an essential element but becomes toxic at excess concentrations, and its use may inadvertently affect non-target organisms such as copepods. Copper affects copepods by lowering reproductive output, prolonging developmental time, and causing increased mortality. As data on copper sensitivity of polar copepods at low temperatures are rare, we conducted onboard survival experiments with the Arctic region’s most common copepod species (Calanus finmarchicus, C. glacialis, C. hyperboreus). Acute survival tests were done for up to 8 days on individuals in 70 ml bottles at 1 °C with nominal copper concentrations ranging from 3 to 480 μg L−1. We used a reduced General Unified Threshold model for Survival (GUTS) to analyse the data, and placed our results in the context of the few published copper sensitivity data of the Antarctic and temperate copepod species at low temperatures. The sensitivity of Cu exposure was similar between the three Calanus species. However, a model comparison suggests that the tested C. glacialis population is less sensitive than the other two species in our experiments. Compared to published data, the three Arctic species appear slightly less sensitive to copper compared to their Antarctic counterparts but more compared to their temperate ones. Our literature search revealed only a few available studies on the copper sensitivity of polar copepods. In the future, this species group will be exposed to more pollutants, which warrants more studies to predict potential risks, especially given possible interactions with environmental factors.

Diatoms of the genus Pseudo-nitzschia, known for their potential toxicity, are integral to the phytoplankton community of the Southern Ocean, which surrounds Antarctica. Despite their ecological importance, the diversity and toxicity of Pseudo-nitzschia in this region remain underexplored. Globally, these diatoms are notorious for forming harmful algal blooms in temperate and tropical waters, causing significant impacts on marine life, ecosystems, and coastal economies. However, detailed information on the diversity, morphology, and toxicity of Pseudo-nitzschia species in Antarctic waters is limited, with molecular characterizations of these species being particularly scarce. During three research expeditions to the Southern Ocean, monoclonal strains of Pseudo-nitzschia were isolated and cultivated. Stored samples from a fourth expedition, the Brategg expedition, were used to complete the description of particularly P. turgidula. Through electron microscopy and molecular analysis, two novel species were identified—Pseudo-nitzschia meridionalis sp. nov. and Pseudo-nitzschia glacialis sp. nov.—alongside the previously described species P. subcurvata, P. turgiduloides, and P. turgidula. Toxin assays revealed no detectable levels of domoic acid in P. turgiduloides, P. turgidula, P. meridionalis sp. nov. and P. glacialis sp. nov. Conversely, P. subcurvata was reported in a related study to produce domoic acid and its isomer, isodomoic acid C. These findings emphasize the need for comprehensive research on the phytoplankton of Antarctic waters, which is currently a largely uncharted domain. With the looming threat of climate change, understanding the dynamics of potentially harmful algal populations in this region is becoming increasingly critical.

Seven passive acoustic surveys for marine mammal sounds were conducted by deploying sonobuoys along ship tracks during Antarctic voyages spanning years 2006-2021. These surveys included nearly 330° of longitude throughout Antarctic (south of 60°S) and sub-Antarctic (between 50-60°S) latitudes. Here, we summarise the presence of calls from critically endangered Antarctic blue whales (Balaenoptera musculus intermedia) detected on all seven of these surveys. We describe and compare the spatial distribution of detections of three different types of Antarctic blue whale calls: unit-A, Z-calls, and D-calls. Three sets of voyages partially overlapped spatially but in different years, providing three regions (Indian Sector, Dumont d’Urville Sea, Ross Sea) to investigate differences over time for these three different call types. The proportion of sonobuoys with calls present was significantly higher in the more recent years for seven of the 15 combinations of years, regions, and call type. The proportion of sonobuoys with calls present was significantly lower only for one of the 15 combinations (unit A in the Ross Sea between 2015 vs 2017), and not significantly different for the remaining seven pairwise comparisons. We discuss possible explanations for these observations including: differences in probability of detection, whale behaviour, whale distribution, and abundance. These explanations are not mutually exclusive and cannot yet be resolved without application of complex analytical methods and collection of additional data. Lastly, we discuss future work that could help clarify the contributions of each of these potential drivers of acoustic detection. We propose continued acoustic data collection, application of new analytical methods, and collection of other synergistic data from Antarctic blue whales on their feeding grounds as a basis for future work on this species. This could provide a cost effective and holistic means of monitoring their status after the effects of 20th century industrial whaling, as well as their responses to natural and anthropogenic changes to their main prey, Antarctic krill, and a changing climate.

Marine predators are integral to the functioning of marine ecosystems, and their consumption requirements should be integrated into ecosystem-based management policies. However, estimating prey consumption in diving marine predators requires innovative methods as predator-prey interactions are rarely observable. We developed a novel method, validated by animal-borne video, that uses tri-axial acceleration and depth data to quantify prey capture rates in chinstrap penguins (Pygoscelis antarctica). These penguins are important consumers of Antarctic krill (Euphausia superba), a commercially harvested crustacean central to the Southern Ocean food web. We collected a large data set (n = 41 individuals) comprising overlapping video, accelerometer and depth data from foraging penguins. Prey captures were manually identified in videos, and those observations were used in supervised training of two deep learning neural networks (convolutional neural network (CNN) and V-Net). Although the CNN and V-Net architectures and input data pipelines differed, both trained models were able to predict prey captures from new acceleration and depth data (linear regression slope of predictions against video-observed prey captures = 1.13; R2 approximate to 0.86). Our results illustrate that deep learning algorithms offer a means to process the large quantities of data generated by contemporary bio-logging sensors to robustly estimate prey capture events in diving marine predators.

This study investigated the close kinship structure of southern right whales on feeding grounds during austral summer seasons. The study was based on biopsy samples of 171 individual whales, which were genotyped with 14 microsatellite DNA loci. Kinship was investigated by using the LOD (Log Odds) score, a relatedness index for a pair of genotypes. Based on a cut-off point of LODPO > 6, which was chosen to balance false positives and negatives, a total of 28 dyads were inferred. Among these, 25 were classified as parent-offspring pairs. Additional genetic (mitochondrial DNA haplotypes) and biological (estimated body length, sex) data were used to provide additional information on the inferred close kin pairs. The elapsed time between sampling varied from 0 (close kin detected in the same austral summer season) to 17 years. All the kin pairs occurred within the Antarctic Indo sector (85°-135°E) and no pair occurred between whales within and outside of this sector. Six pairs were between individuals in high (Antarctic) and lower latitudes. Results of the present analysis on kinship are consistent with the views that whales in the Indo sector of the Antarctic are related with the breeding ground in Southwest Australia, and that whales from this population can occupy different feeding grounds. The present study has the potential to contribute to the conservation of the southern right whales through the monitoring of important population parameters such as population sizes and growth rate, in addition to assist the interpretation of stock structure derived from standard population genetic analyses.