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Global climate change is significantly affecting marine life off the northern tip of the Antarctic Peninsula, but little is known about microbial ecology in this area. The main goal of this study was to investigate the bacterioplankton community structure in surface waters using pyrosequencing and to determine factors influencing this community. Pelagibacterales and Rhodobacterales (Alphaproteobacteria), Oceanospirillales and Alteromonadales (Gammaproteobacteria), and Flavobacteriales (Bacteroidetes) were the core taxa in our samples, and the five most relatively abundant genera were Pelagibacter, Polaribacter, Octadecabacter, group HTCC2207 and Sulfitobacter. Although nutrients and chlorophyll a (chl a) contributed more to bacterioplankton community structure than water masses or depth, only 30.39% of the variance could be explained by the investigated environmental factors, as revealed by RDA and pRDA. No significant difference with respect to nutrients and chl a was observed among water masses or depth, as indicated by ANOVA. Furthermore, significant correlations among the dominant bacterial genera were more common than correlations between dominant genera and environmental factors, as revealed by Spearman analysis. We conclude that nutrients and chl a become homogeneous and that interpopulation interactions may have a central role in influencing the bacterial community structure in surface waters off the northern tip of the Antarctic Peninsula during the summer.

In the Southern Ocean, polynyas exhibit enhanced rates of primary productivity and represent large seasonal sinks for atmospheric CO2. Three contrasting east Antarctic polynyas were visited in late December to early January 2017: the Dalton, Mertz, and Ninnis polynyas. In the Mertz and Ninnis polynyas, phytoplankton biomass (average of 322 and 354 mg chlorophyll a (Chl a)/m2, respectively) and net community production (5.3 and 4.6 mol C/m2, respectively) were approximately 3 times those measured in the Dalton polynya (average of 122 mg Chl a/m2 and 1.8 mol C/m2). Phytoplankton communities also differed between the polynyas. Diatoms were thriving in the Mertz and Ninnis polynyas but not in the Dalton polynya, where Phaeocystis antarctica dominated. These strong regional differences were explored using physiological, biological, and physical parameters. The most likely drivers of the observed higher productivity in the Mertz and Ninnis were the relatively shallow inflow of iron-rich modified Circumpolar Deep Water onto the shelf as well as a very large sea ice meltwater contribution. The productivity contrast between the three polynyas could not be explained by (1) the input of glacial meltwater, (2) the presence of Ice Shelf Water, or (3) stratification of the mixed layer. Our results show that physical drivers regulate the productivity of polynyas, suggesting that the response of biological productivity and carbon export to future change will vary among polynyas.

Antarctic krill Euphausia superba are key components of Antarctic ecosystems, serving as the major prey item for most of the megafauna in the region. Coastal fjords along the West Antarctic Peninsula have been identified as biological hotspots, areas in which high biomasses of both E. superba and their megafauna predators are consistently observed. We investigated feeding by E. superba in fjords and adjacent open waters of the West Antarctic Peninsula. Next generation sequencing of stomach contents from 174 krill indicated a diverse diet, with broad patterns consistent with previous understanding of E. superba feeding. Diatom sequence reads were frequent and abundant, indicating a largely diatom-based diet, while the occasional presence of high abundances of copepod sequence reads suggests carnivory supplemented the diet. Striking differences were observed between the stomach contents of krill collected in fjords and those of krill collected in adjacent open waters. Chaetoceros spp. diatoms made up 71% of the stomach contents sequences of krill collected in fjords, but less than 10% of the stomach contents sequences of krill collected in open waters. These differences could not be explained by differences in the surface water phytoplankton communities, as in both open waters and fjords Chaetoceros spp. made up less than 10% of the surface water sequence read assemblages. These feeding differences highlight the importance of taking into account regional differences in krill feeding when considering E. superba’s roles in Southern Ocean ecosystems, and suggest krill in fjords may make use of vertical structure in phytoplankton assemblages.

The contribution of oceanic net community production (NCP) to the observed seasonal cycle in atmospheric potential oxygen (APO) is estimated at Cape Grim, Tasmania. The resulting APONCP signal is compared to satellite and ocean model-based estimates of POC export and NCP across the Southern Ocean. The satellite products underestimate the amplitude of the observed APONCP seasonal cycle by more than a factor of 2. Ocean models suggest two reasons for this underestimate: (1) Current satellite products substantially underestimate the magnitude of NCP in early spring. (2) Seasonal O2 outgassing is supported in large part by storage of carbon in DOC and living biomass. More DOC observations are needed to help evaluate this latter model prediction. Satellite products could be improved by developing seasonally dependent relationships between remote sensing chlorophyll data and in situ NCP, recognizing that the former is a measure of mass, the latter of flux.

This study aims to describe the planktonic food web structure with respect to phytoplankton biomass (chlorophyll a ) and prevailing environmental conditions at the South Subtropical Front (SSTF) and the Polar Front (PF) in the Indian sector of the Southern Ocean. Sampling was carried out at each front for 72 hrs, at 6-hr intervals, during the austral summer 2011. Considerable variations were observed in the hydrography between these two fronts. A strong temperature minimum layer was observed at the PF. Although the surface primary production and chlorophyll a values showed similar trends at both the fronts, the water column values of these parameters showed major disparities. The phytoplankton composition also revealed marked difference between the fronts. A deep chlorophyll maximum concordant with the upper limit of the temperature minimum layer was prominent at the PF. The microzooplankton abundance at the SSTF was twice as high as at the PF. The mesozooplankton biovolume and population density also showed considerable variations between these fronts. Noticeable diel variations were observed in the surface mesozooplankton biovolumes at both the fronts and the copepod Pleuromamma gracilis showed active diel vertical migration at SSTF. Both the grazing and senescence indices showed significant variations between these fronts, suggesting a disparity in the ecological efficiency of the two regions. The variability observed in the plankton community structure with respect to the hydrography and the biological components measured suggests that a multivorous food web at the SSTF and a conventional food web at the PF prevailed during the period of study.

The genesis of phytoplankton blooms and the fate of their biomass in iron-limited, high-nutrient-low-chlorophyll regions can be studied under natural conditions with ocean iron fertilization (OIF) experiments. The Indo-German OIF experiment LOHAFEX was carried out over 40 d in late summer 2009 within the cold core of a mesoscale eddy in the productive south-west Atlantic sector of the Southern Ocean. Silicate concentrations were very low, and phytoplankton biomass was dominated by autotrophic nanoflagellates (ANF) in the size range 3-10 µm. As in all previous OIF experiments, the phytoplankton responded to iron fertilization by increasing the maximum quantum yield (Fv/Fm) and cellular chlorophyll levels. Within 3 wk, chlorophyll levels tripled and ANF biomass doubled. With the exception of some diatoms and dinoflagellates, the biomass levels of all other groups of the phyto- and protozooplankton (heterotrophic nanoflagellates, dinoflagellates and ciliates) remained remarkably stable throughout the experiment both inside and outside the fertilized patch. We attribute the unusually high biomass attained and maintained by ANF to the absence of their grazers, the salps, and to constraints on protozooplankton grazers by heavy predation exerted by the large copepod stock. The resistance to change of the ecosystem structure over 38 d after fertilization, indicated by homogeneity at regional and temporal scales, suggests that it was locked into a stable, mature state that had evolved in the course of the seasonal cycle. The LOHAFEX bloom provides a case study of a resistant/robust dynamic equilibrium between auto- and heterotrophic ecosystem components resulting in low vertical flux both inside and outside the patch despite high biomass levels. KEYWORDS: Antarctic · Protists · Fe-limitation · Si-limitation · Ecology-biogeochemistry relationship · Carbon:chlorophyll ratios · Ecosystem stability

In polar seas, the seasonal melting of ice triggers the development of an open-waterecosystem characterized by short-lived algal blooms, the grazing and development of zooplank-ton, and the influx of avian and mammalian predators. Spatial heterogeneity in the timing of icemelt generates temporal variability in the development of these events across the habitat, offeringa natural framework to assess how foraging marine predators respond to the spring phenology.We combined 4 yr of tracking data of Antarctic petrels Thalassoica antarcticawith synopticremote-sensing data on sea ice and chlorophyll ato test how the development of melting ice andprimary production drive Antarctic petrel foraging. Cross-correlation analyses of first-passagetime revealed that Antarctic petrels utilized foraging areas with a spatial scale of 300 km. Theseareas changed position or disappeared within 10 to 30 d and showed no spatial consistency amongyears. Generalized additive model (GAM) analyses suggested that the presence of foraging areaswas related to the time since ice melt. Antarctic petrels concentrated their search effort in meltingareas and in areas that had reached an age of 50 to 60 d from the date of ice melt. We found nosignificant relationship between search effort and chlorophyll aconcentration. We suggest thatthese foraging patterns were related to the vertical distribution and profitability of the main prey,the Antarctic krill Euphausia superba. Our study demonstrates that the annual ice melt in theSouthern Ocean shapes the development of a highly patchy and elusive food web, underscoringthe importance of flexible foraging strategies among top predators. KEY WORDS: Area-restricted search · Euphausia superba· Marginal ice zone · Phytoplanktonbiomass · Procellariiformes · Sea ice dynamics · Southern Ocean · Thalassoica antarctica

In the ongoing discussion of the distribution of protists, whether they are globally distributed or endemic to one or both of the polar regions is the subject of heated debate. In this study, we compared next-generation sequencing data from the Arctic and the Southern oceans to reveal the extent of similarities and dissimilarities between the protist communities in the polar regions. We found a total overlap of operational taxonomic units (OTUs) between the two regions of 11.2%. On closer inspection of different taxonomic groups, the overlap ranged between 5.5% (haptophytes) and 14.5% (alveolates). Within the different groups, the proportion of OTUs occurring in both regions greatly differed between the polar regions. On the one hand, the overlap between these two regions is remarkable, given the geographical distance between them. On the other hand, one could expect a greater overlap of OTUs between these regions on account of the similar environmental conditions. The overlap suggests a connection between the polar regions for at least certain species or that the evolutionary divergence has been slow, relative to the timescales of isolation. The different proportions of common OTUs among the groups or regions may be a result of different life cycle strategies or environmental adaptations. Keywords: 18S rDNA; bipolar; next-generation sequencing; phytoplankton; polar regions; protist distribution.

The climate-driven collapses of the Larsen A and B ice shelves have opened up new regions of the coastal Antarctic to the influence of sea ice resulting in increases in seasonal primary production. In this study, passive microwave remote sensing of sea ice concentration and satellite imagery of ocean color are employed to quantify the magnitude of and variability in open water area and net primary productivity (NPP) in the Larsen embayments between 1997 and 2011. Numerical model output provides context to analyze atmospheric forcing on the coastal ocean. Following ice shelf disintegration the embayments function as coastal, sensible heat polynyas. The Larsen A and B are as productive as other Antarctic shelf regions, with seasonally averaged daily NPP rates reaching 1232 and 1127 mg C m−2 d−1 and annual rates reaching 200 and 184 g C m−2 yr−1, respectively. A persistent cross-shelf gradient in NPP is present with higher productivity rates offshore, contrasting with patterns observed along the West Antarctic Peninsula. Embayment productivity is intimately tied to sea ice dynamics, with large interannual variability in NPP rates driven by open water area and the timing of embayment opening. Opening of the embayment is linked to periods of positive Southern Annular Mode and stronger westerlies, which lead to the vertical deflection of warm, maritime air over the peninsula and down the leeward side causing increases in surface air temperature and wind velocity. High productivity in these new polynyas is likely to have ramifications for organic matter export and marine ecosystem evolution.

The visible reflectance spectroscopy (VRS) and chlorophyll a concentration were determined in three sediment profiles collected from East Antarctica to investigate the potential application of VRS in reconstructing historical changes in Antarctic lake primary productivity. The results showed that the appearance of a trough at 650–700 nm is an important marker for chlorophyll a concentration and can therefore be used to distinguish the sedimentary organic matter source from guano and algae. The measured chlorophyll a content had significant positive correlations with the trough area between 650 and 700 nm, and no distinct trough was found in the sediments with organic matter completely derived from guano. Modelling results showed that the spectra spectrally inferred chlorophyll a content, and the measured data exhibit consistent trends with depth, showing that the dimensionless trough area can serve as an independent proxy for reconstructing historical fluctuations in the primary production of Antarctic ponds. The correlation of phosphorus (P) with measured and inferred chlorophyll a contents in ornithogenic sediments near penguin colonies indicates that the change in primary productivity in the Antarctic ponds investigated was closely related to the amount of guano input from these birds. Keywords: Reflectance spectroscopy; ornithogenic sediments; chlorophyll a; Antarctic ponds; primary productivity; VRS.

The Amundsen Sea has been described as one of the most productive and dynamic pelagic systems in Antarctica and is one of the least studied. Based on samples from 15 stations in the Amundsen Sea, we describe for the first time the composition of the tintinnid ciliate assemblage of the microzooplankton. We compared the species compositions of coastal polynya sites, where the phytoplankton communities are dominated by Phaeocystis, to those of the offshore deep water sites, which are dominated by diatoms. We found a total of 15 species. Polynya sites were dominated by a few species of tintinnids, mostly those endemic to the Southern Ocean. In contrast, the deep-water sites contained many widespread tintinnid species, which are known from a wide variety of systems as well as other areas of the Southern Ocean. We examined polymorphism known to characterize the Antarctic tintinnid species Cymatocylis affinis/convallaria and Codonellopsis gaussi. We found that the types or forms found appeared unrelated to the type of microplankton community, defined by the identity of the dominant phytoplankton taxa. However, the number of different morphotypes found at a site appeared related to the overall concentration of the species, suggesting that different morphologies, previously considered distinct species, may simply be developmental stages. Keywords: Zooplankton; microzooplankton; polynya; protists; Phaeocystis; diatoms.

In this study, we have determined the contents and distribution of zinc and cadmium in the surface sediments from Prydz Bay, East Antarctica. The main sources of the trace elements and their geographic heterogeneity, and the relation between Zn and Cd, are discussed based on the cluster analysis, principle component analysis and considerations of biogenic and lithogenic inputs. The results show that the contents of trace metals range from 34.6 to 96.6 mg kg-1 for Zn, and from 0.254 to 0.441 mg kg-1 for Cd. Calculations of the enrichment factor indicated no significant anthropogenic impact. Biogenic and lithogenic inputs are the main sources of trace metals. They are almost equal for Zn and Cd at the Amery Ice Shelf edge, while the continental shelf and deep ocean are dominated by biogenic inputs. The contribution of biogenic inputs is much higher for Zn than for Cd at the deep ocean. Calculations of biogenic trace metals revealed different relationships between biogenic Zn and biogenic Cd, which reflect the biological uptake by phytoplankton in the water column. Keywords: Trace elements; sources; enrichment factor; cluster analysis; principal component analysis; Antarctica.

Physiological characteristics of inorganic C uptake were examined in Southern Ocean ice algae and phytoplankton assemblages. Ice algal and phytoplankton assemblages were largely dominated by diatoms and Phaeocystis antarctica, and showed a high capacity for HCO3- utilization, with direct HCO3- transport accounting for ~60% of total inorganic C uptake. Extracellular carbonic anhydrase (eCA) was detectable in all samples, but with significantly lower activity in sea ice algae. Neither HCO3- transport nor eCA activity was related to the in situ partial pressure of CO2 (pCO2) or taxonomic composition of samples. The half-saturation constant (KS) for inorganic C ranged from ~100 to 5000 µM, and showed significantly more variability among sea ice algae than phytoplankton assemblages. For the phytoplankton assemblages, there were significant positive correlations between in situ pCO2 and KS (higher C substrate affinity in low pCO2 waters), and also between KS and maximum C uptake rates (Vmax). In contrast, KS and Vmax in sea-ice algal assemblages were not correlated to each other, or to any other measured variables. The C isotope composition of particulate organic carbon(δ13C-POC) in the phytoplankton assemblages showed modest variability (range -30 to -24.6‰) and was significantly correlated to the ratio of inferred growth rates (derived from Vmax) and in situ CO2 concentrations, but not to any measured C uptake parameters. δ13C-POC in sea ice algal samples (range -25.7 to -12.9‰) was significantly heavier than in the phytoplankton assemblages, and not correlated to any other variables. Our results provide evidence for the widespread occurrence of carbon-concentrating mechanisms in Southern Ocean sea ice algae and phytoplankton assemblages. KEYWORDS: Phytoplankton · Sea ice algae · Inorganic carbon uptake · HCO3- · Carbonic anhydrase

We describe the upper ocean thermal structure and surface nutrient concentrations between New Zealand and Antarctica along five transects that cross the Subantarctic Front, the Polar Front and the southern Antarctic Circumpolar Current front. The surface water thermal structure is coupled with variations in surface nutrient concentrations, making water masses identifiable by both temperature and nutrient ranges. In particular, a strong latitudinal gradient in orthosilicate concentration is centred at the Polar Front. On the earlier sections, which extend south-west from the Campbell Plateau, orthosilicate increases sharply southward from 10-15 to 50-55µmol l-1, between 58°S and 60°S, while surface temperature drops from 7°C to 2°C. Nitrate increases more regularly toward the south, with concentrations ranging from 10-12µmol l-1 at 54°S to 25-30µmol l-1 at 66°S. The same features are observed during the later transects between New Zealand and the Ross Sea, but the sharp silica and surface temperature gradients are shifted between 60°S and 64°S. Both temporal and spatial factors may influence the observed variability. The January transect suggests an uptake of silica, orthophosphate and nitrate between 63°S and 70°S over the intervening month, with an average depletion near 37%, 44% and 29%, respectively. An N/P apparent drawdown ratio of 8.8±4.1 and an Si/N apparent drawdown ratio >1 suggests this depletion results from a seasonal diatom bloom. A southward movement of the oceanic fronts between New Zealand and the Ross Sea relative to prior measurements is consistent with reports of recent warming and changes in the Antarctic Circumpolar Current. Keywords: Southern Ocean, nutrients, silica belt, Antarctic Circumpolar Current, expendable bathythermograph.

The phytoplankton onset following the spring ice break-up in Adélie Land, East Antarctica, was studied along a short transect, from 400 m off the continent to 5 km offshore, during the austral summer of 2002. Eight days after the ice break-up, some large colonial and solitary diatom cells, known to be associated with land-fast ice and present in downward fluxes, were unable to adapt in ice-free waters, while some other solitary and short-colony forming taxa (e.g., Fragilariopsis curta, F. cylindrus) did develop. Pelagic species were becoming more abundant offshore, replacing the typical sympagic (ice-associated) taxa. Archaeomonad cysts, usually associated with sea ice, were recorded in the surface waters nearshore. Rough weather restricted the data set, but we were able to confirm that some microalgae may be reliable sea-ice indicators and that seeding by sea ice only concerns a few taxa in this coastal area of East Antarctica. Keywords: Ice break-up; phytoplankton; sea-ice signature; East Antarctica

As part of the US-AMLR program in January-February of 2006, 99 stations in the South Shetland Islands-Antarctic Peninsula region were sampled to understand the variability in hydrographic and biological properties related to the abundance and distribution of krill in this area. Concentrations of dissolved iron (DFe) and total acid-leachable iron (TaLFe) were measured in the upper 150 m at 16 of these stations (both coastal and pelagic waters) to better resolve the factors limiting primary production in this area and in downstream waters of the Scotia Sea. The concentrations of DFe and TaLFe in the upper mixed layer (UML) were relatively high in Weddell Sea Shelf Waters (~0.6 nM and 15 nM, respectively) and low in Drake Passage waters (~0.2 nM and 0.9 nM, respectively). In the Bransfield Strait, representing a mixture of waters from the Weddell Sea and the Antarctic Circumpolar Current (ACC), concentrations of DFe were ~0.4 nM and of TaLFe ~1.7 nM. The highest concentrations of DFe and TaLFe in the UML were found at shallow coastal stations close to Livingston Island (~1.6 nM and 100 nM, respectively). The ratio of TaLFe:DFe varied with the distance to land: ~45 at the shallow coastal stations, ~15 in the high-salinity waters of Bransfield Strait, and ~4 in ACC waters. Concentrations of DFe increased slightly with depth in the water column, while that of TaLFe did not show any consistent trend with depth. Our Fe data are discussed in regard to the hydrography and water circulation patterns in the study area, and with the hypothesis that the relatively high rates of primary production in the central regions of the Scotia Sea are partially sustained by natural iron enrichment resulting from a northeasterly flow of iron-rich coastal waters originating in the South Shetland Islands-Antarctic Peninsula region.