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Atmospheric CO2 concentrations (pCO2) varied on millennial timescales in phase with Antarctic temperature during the last glacial period. A prevailing view has been that carbon release and uptake by the Southern Ocean dominated this millennial-scale variability in pCO2. Here, using Earth System Model experiments with an improved parameterization of ocean vertical mixing, we find a major role for terrestrial and oceanic carbon releases in driving the pCO2 trend. In our simulations, a change in Northern Hemisphere insolation weakens the Atlantic Meridional Overturning Circulation (AMOC) leading to increasing pCO2 and Antarctic temperatures. The simulated rise in pCO2 is caused in equal parts by increased CO2 outgassing from the global ocean due to a reduced biological activity and changed ventilation rates, and terrestrial carbon release as a response to southward migration of the Intertropical Convergence Zone. The simulated terrestrial release of carbon could explain stadial declines in organic carbon reservoirs observed in recent ice core δ13C measurements. Our results show that parallel variations in Antarctic temperature and pCO2 do not necessitate that the Southern Ocean dominates carbon exchange; instead, changes in carbon flux from the global ocean and land carbon reservoirs can explain the observed pCO2 (and δ13C) changes.

The contribution of oceanic net community production (NCP) to the observed seasonal cycle in atmospheric potential oxygen (APO) is estimated at Cape Grim, Tasmania. The resulting APONCP signal is compared to satellite and ocean model-based estimates of POC export and NCP across the Southern Ocean. The satellite products underestimate the amplitude of the observed APONCP seasonal cycle by more than a factor of 2. Ocean models suggest two reasons for this underestimate: (1) Current satellite products substantially underestimate the magnitude of NCP in early spring. (2) Seasonal O2 outgassing is supported in large part by storage of carbon in DOC and living biomass. More DOC observations are needed to help evaluate this latter model prediction. Satellite products could be improved by developing seasonally dependent relationships between remote sensing chlorophyll data and in situ NCP, recognizing that the former is a measure of mass, the latter of flux.

The genesis of phytoplankton blooms and the fate of their biomass in iron-limited, high-nutrient-low-chlorophyll regions can be studied under natural conditions with ocean iron fertilization (OIF) experiments. The Indo-German OIF experiment LOHAFEX was carried out over 40 d in late summer 2009 within the cold core of a mesoscale eddy in the productive south-west Atlantic sector of the Southern Ocean. Silicate concentrations were very low, and phytoplankton biomass was dominated by autotrophic nanoflagellates (ANF) in the size range 3-10 µm. As in all previous OIF experiments, the phytoplankton responded to iron fertilization by increasing the maximum quantum yield (Fv/Fm) and cellular chlorophyll levels. Within 3 wk, chlorophyll levels tripled and ANF biomass doubled. With the exception of some diatoms and dinoflagellates, the biomass levels of all other groups of the phyto- and protozooplankton (heterotrophic nanoflagellates, dinoflagellates and ciliates) remained remarkably stable throughout the experiment both inside and outside the fertilized patch. We attribute the unusually high biomass attained and maintained by ANF to the absence of their grazers, the salps, and to constraints on protozooplankton grazers by heavy predation exerted by the large copepod stock. The resistance to change of the ecosystem structure over 38 d after fertilization, indicated by homogeneity at regional and temporal scales, suggests that it was locked into a stable, mature state that had evolved in the course of the seasonal cycle. The LOHAFEX bloom provides a case study of a resistant/robust dynamic equilibrium between auto- and heterotrophic ecosystem components resulting in low vertical flux both inside and outside the patch despite high biomass levels. KEYWORDS: Antarctic · Protists · Fe-limitation · Si-limitation · Ecology-biogeochemistry relationship · Carbon:chlorophyll ratios · Ecosystem stability

Snowmelt in the Antarctic Peninsula region has increased significantly in recent decades, leading to greater liquid water availability across a more expansive area. As a consequence, changes in the biological activity within wet Antarctic snow require consideration if we are to better understand terrestrial carbon cycling on Earth's coldest continent. This paper therefore examines the relationship between microbial communities and the chemical and physical environment of wet snow habitats on Livingston Island of the maritime Antarctic. In so doing, we reveal a strong reduction in bacterial diversity and autotrophic biomass within a short (<1 km) distance from the coast. Coastal snowpacks, fertilized by greater amounts of nutrients from rock debris and marine fauna, develop obvious, pigmented snow algal communities that control the absorption of visible light to a far greater extent than with the inland glacial snowpacks. Absorption by carotenoid pigments is most influential at the surface, while chlorophyll is most influential beneath it. The coastal snowpacks also indicate higher concentrations of dissolved inorganic carbon and CO2 in interstitial air, as well as a close relationship between chlorophyll and dissolved organic carbon (DOC). As a consequence, the DOC resource available in coastal snow can support a more diverse bacterial community that includes microorganisms from a range of nearby terrestrial and marine habitats. Therefore, since further expansion of the melt zone will influence glacial snowpacks more than coastal ones, care must be taken when considering the types of communities that may be expected to evolve there.

While the number of surface ocean CO2 partial pressure (pCO2) measurements has soared the recent decades, the Southern Ocean remains undersampled. Williams et al. (2017, https://doi.org/10.1002/2016GB005541) now present pCO2 estimates based on data from pH-sensor equipped Bio-Argo floats, which have been measuring in the Southern Ocean since 2014. The authors demonstrate the utility of these data for understanding the carbon cycle in this region, which has a large influence on the distribution of CO2 between the ocean and atmosphere. Biogeochemical sensors deployed on autonomous platforms hold the potential to shape our view of the ocean carbon cycle in the coming decades.

The Southern Ocean (SO) carbon sink has strengthened substantially since the year 2000, following a decade of a weakening trend. However, the surface ocean pCO2 data underlying this trend reversal are sparse, requiring a substantial amount of extrapolation to map the data. Here we use nine different pCO2 mapping products to investigate the SO trends and their sensitivity to the mapping procedure. We find a robust temporal coherence for the entire SO, with eight of the nine products agreeing on the sign of the decadal trends, that is, a weakening CO2 sink trend in the 1990s (on average 0.22 ± 0.24 Pg C yr−1 decade−1), and a strengthening sink trend during the 2000s (−0.35 ± 0.23 Pg C yr−1 decade−1). Spatially, the multiproduct mean reveals rather uniform trends, but the confidence is limited, given the small number of statistically significant trends from the individual products, particularly during the data-sparse 1990–1999 period.

In this paper we evaluated the composition and abundance of molluscs associated with beds of the red algae Gigartina, located in the South Shetland Islands (Antarctic Peninsula) and the Strait of Magellan (southern Chile). During the summer season of 2013, samples were obtained by scuba diving using a 0.25 m2 quadrat, arranged randomly within the bed. We extracted a total of 15 quadrats per sampling site. For Antarctic Peninsula beds the most abundant species were the bivalve Lissarca miliaris (233 individuals) and the gastropod Laevilacunaria antarctica (94 individuals), while for Strait of Magellan beds the most abundant species was the polyplacophoran Callochiton puniceus (36 individuals). Comparative analysis between the two molluscan assemblages showed significant differences in the faunal composition between the Antarctic Peninsula and Strait of Magellan (f = 64.474; p = 0.0001). Therefore, molluscs reported in both areas are characteristic of their respective biogeographic area. Finally, Gigartina species play an important role in the formation of patterns of abundance and diversity of the communities associated with them.

Observed seasonal cycles in atmospheric potential oxygen (APO ~ O2 + 1.1 CO2) were used to evaluate eight ocean biogeochemistry models from the Coupled Model Intercomparison Project (CMIP5). Model APO seasonal cycles were computed from the CMIP5 air-sea O2 and CO2 fluxes and compared to observations at three Southern Hemisphere monitoring sites. Four of the models captured either the observed APO seasonal amplitude or phasing relatively well, while the other four did not. Many models had an unrealistic seasonal phasing or amplitude of the CO2 flux, which in turn influenced APO. By 2100 under RCP8.5, the models projected little change in the O2 component of APO but large changes in the seasonality of the CO2 component associated with ocean acidification. The models with poorer performance on present-day APO tended to project larger net carbon uptake in the Southern Ocean, both today and in 2100.

To evaluate the impact of modern glacier melting on the chemical enrichment of Antarctic coastal waters, we measured trace elements, including dissolved iron (Fe) and rare earth elements (REEs), together with dissolved inorganic nitrogen, phosphorous, silicate and dissolved organic carbon (DOC) in ice, snow and coastal seawater of Marian Cove in the northernmost part of Antarctica (62°S). There was an increase in the concentrations of Fe and other trace elements (Al, Mn, Cr, Ni, Co, Pb and REEs) between the bay mouth and the glacier valleys. Good correlations between salinity and these chemical elements indicate that the trend was mainly due to the influence of glacier meltwater (GMW). When the effect of GMW was quantified based on plots of its presence (average 5.7%) in the surface water of the cove, the concentrations of trace elements in seawater increased 18-fold for Fe, eight- to 10-fold for Al and Mn and up to four-fold for Cr, Ni, Co, Pb and REEs by GMW. However, the contribution of GMW to inorganic nutrients and DOC was negligible. The significance of GMW-borne REE contribution in this cove was further evidenced by middle REE enrichment in cove water. Our results suggest that the currently increasing glacier melting in Antarctica has a significant influence on the level of trace elements, particularly Fe, in cove water, which in turn may have a significant impact on the biogeochemistry of coastal seawater in Antarctica. Keywords: Iron; trace elements; rare earth elements; glacier melting; Antarctica; Marian Cove.

This study aimed to quantify the nitrous oxide (N2O) and methane (CH4) fluxes at sites with different vegetation covers and where bird activity was present or absent using the static chamber method, on Rip Point, Nelson Island, maritime Antarctic. The sites were soils covered by Sanionia uncinata, lichens, Prasiola crispa, Deschampsia antarctica and bare soil. Seabirds used the P. crispa and D. antarctica sites as nesting areas. Soil mineral N contents, air and soil temperature and water-filled pore space were measured, and the content of total organic C and particulate organic C, total N, bulk density and texture were determined to identify controlling variables of the gas emissions. The N2O and CH4 flux rates were low for all sampling events. Mean N2O flux rates ranged from 0.11±1.93 up to 21.25±22.14 µg N2O m−2 h−1 for the soils under lichen and P. crispa cover, respectively. For the CH4 fluxes, only the P. crispa site showed a low positive mean (0.47±3.61 µg CH4 m−2 h−1). The bare soil showed the greatest absorption of CH4 (−11.92±5.7 µg CH4 m−2 h−1), probably favoured by the coarse soil texture. Bare soil and S. uncinata sites had N2O accumulated emissions close to zero. Net CH4 accumulated emission was observed only at the P. crispa site, which was correlated with (p&lt;0.001). These results indicate that seabird activity influences N2O and CH4 soil fluxes, while vegetation has little influence, and bare soil areas in maritime Antarctica could be greenhouse gas sinks. Keywords: Soil greenhouse gases; seabirds; vegetal cover; maritime Antarctica.

Atmospheric aerosol samples were collected over the Southern Ocean (SO) and coastal East Antarctica (CEA) during the austral summer of 2010/11. Samples were analysed for trace elements, including Na, Mg, K, Al, Fe, Mn, Ni, Cd and Se, by inductively coupled plasma mass spectrometry (ICP-MS). The mean atmospheric concentrations over the SO were 1100 ng m−3 for Na, 190 ng m−3 for Mg, 150 ng m−3 for Al, 14 ng m−3 for Fe, 0.46 ng m−3 for Mn and 0.25 ng m−3 for Se. Over CEA, the mean concentrations were 990 ng m−3 for Na, 180 ng m−3 for Mg, 190 ng m−3 for Al, 26 ng m−3 for Fe, 0.70 ng m−3 for Mn and 0.29 ng m−3 for Se. Particle size distributions, enrichment factors (EFs) and correlation analysis indicate that Na, Mg and K mainly came from the marine source, while Al, Fe and Mn were mainly from the crustal source, which also contributed to Mg and K over CEA. High EFs were associated with Ni, Cd and Se, suggesting likely contributions from mixed sources from the Antarctic continent, long-range transport, marine biogenic emissions and anthropogenic emissions. Sea-salt elements (Na, Mg, K) were mainly accumulated in the coarse mode, and crustal elements (Al, Fe, Mn) presented a bimodal size distribution pattern. Bioactive elements (Fe, Ni, Cd) were enriched in the fine mode, especially with samples collected over the SO, possibly affecting biogeochemical cycles in this oceanic region. Keywords: Southern Ocean; coastal East Antarctica; trace elements; size distribution; sources.

The visible reflectance spectroscopy (VRS) and chlorophyll a concentration were determined in three sediment profiles collected from East Antarctica to investigate the potential application of VRS in reconstructing historical changes in Antarctic lake primary productivity. The results showed that the appearance of a trough at 650–700 nm is an important marker for chlorophyll a concentration and can therefore be used to distinguish the sedimentary organic matter source from guano and algae. The measured chlorophyll a content had significant positive correlations with the trough area between 650 and 700 nm, and no distinct trough was found in the sediments with organic matter completely derived from guano. Modelling results showed that the spectra spectrally inferred chlorophyll a content, and the measured data exhibit consistent trends with depth, showing that the dimensionless trough area can serve as an independent proxy for reconstructing historical fluctuations in the primary production of Antarctic ponds. The correlation of phosphorus (P) with measured and inferred chlorophyll a contents in ornithogenic sediments near penguin colonies indicates that the change in primary productivity in the Antarctic ponds investigated was closely related to the amount of guano input from these birds. Keywords: Reflectance spectroscopy; ornithogenic sediments; chlorophyll a; Antarctic ponds; primary productivity; VRS.

Enhancement of ocean alkalinity using calcium compounds, e.g., lime has been proposed to mitigate further increase of atmospheric CO2 and ocean acidification due to anthropogenic CO2 emissions. Using a global model, we show that such alkalinization has the potential to preserve pH and the saturation state of carbonate minerals at close to today's values. Effects of alkalinization persist after termination: Atmospheric CO2 and pH do not return to unmitigated levels. Only scenarios in which large amounts of alkalinity (i.e., in a ratio of 2:1 with respect to emitted CO2) are added over large ocean areas can boost oceanic CO2 uptake sufficiently to avoid further ocean acidification on the global scale, thereby elevating some key biogeochemical parameters, e.g., pH significantly above preindustrial levels. Smaller-scale alkalinization could counteract ocean acidification on a subregional or even local scale, e.g., in upwelling systems. The decrease of atmospheric CO2 would then be a small side effect.

The McMurdo Dry Valleys are one of the most arid environments on Earth. Over the soil landscape for the majority of the year, biological and ecosystem processes in the dry valleys are constrained by the low temperatures and limited availability of water. The prevalence of these physical limitations in controlling biological and ecosystem processes makes the dry valleys a climatesensitive system, poised to experience substantial changes following projected future warming. Short-duration increases in summer temperatures are associated with pulses of water from melting ice reserves, including glaciers, snow and permafrost. Such pulses alter soil geochemistry by mobilizing and redistributing soil salts (via enhanced weathering, solubility and mobility), which can alter habitat suitability for soil organisms. Resulting changes in soil community composition or distribution may alter the biogeochemical processes in which they take part. Here, we review the potential impacts of meltwater pulses and present new field data documenting instances of meltwater pulse events that result from different water sources and hydrological patterns, and discuss their potential influence on soil biology and biogeochemistry. We use these examples to discuss the potential impacts of future climate change on the McMurdo Dry Valley soil ecosystem.Keywords: Water pulse; climate change; polar desert; International Polar Year; discrete warming events; soil biogeochemistry.

The contamination of polar regions with mercury that is transported from lower latitudes as inorganic mercury has resulted in the accumulation of methylmercury (MeHg) in food chains, risking the health of humans and wildlife. While production of MeHg has been documented in polar marine and terrestrial environments, little is known about the responsible transformations and transport pathways and the processes that control them. We posit that as in temperate environments, microbial transformations play a key role in mercury geochemical cycling in polar regions by: (1) methylating mercury by one of four proposed pathways, some not previously described; (2) degrading MeHg by activities of mercury resistant and other bacteria; and (3) carrying out redox transformations that control the supply of the mercuric ion, the substrate of methylation reactions. Recent analyses have identified a high potential for mercury-resistant microbes that express the enzyme mercuric reductase to affect the production of gaseous elemental mercury when and where daylight is limited. The integration of microbially mediated processes in the paradigms that describe mercury geochemical cycling is therefore of high priority especially in light of concerns regarding the effect of global warming and permafrost thawing on input of MeHg to polar regions. Keywords: Microbiology; mercury biogeochemistry; redox transformations; polar regions; methylation

The phytoplankton onset following the spring ice break-up in Adélie Land, East Antarctica, was studied along a short transect, from 400 m off the continent to 5 km offshore, during the austral summer of 2002. Eight days after the ice break-up, some large colonial and solitary diatom cells, known to be associated with land-fast ice and present in downward fluxes, were unable to adapt in ice-free waters, while some other solitary and short-colony forming taxa (e.g., Fragilariopsis curta, F. cylindrus) did develop. Pelagic species were becoming more abundant offshore, replacing the typical sympagic (ice-associated) taxa. Archaeomonad cysts, usually associated with sea ice, were recorded in the surface waters nearshore. Rough weather restricted the data set, but we were able to confirm that some microalgae may be reliable sea-ice indicators and that seeding by sea ice only concerns a few taxa in this coastal area of East Antarctica. Keywords: Ice break-up; phytoplankton; sea-ice signature; East Antarctica

As part of the US-AMLR program in January-February of 2006, 99 stations in the South Shetland Islands-Antarctic Peninsula region were sampled to understand the variability in hydrographic and biological properties related to the abundance and distribution of krill in this area. Concentrations of dissolved iron (DFe) and total acid-leachable iron (TaLFe) were measured in the upper 150 m at 16 of these stations (both coastal and pelagic waters) to better resolve the factors limiting primary production in this area and in downstream waters of the Scotia Sea. The concentrations of DFe and TaLFe in the upper mixed layer (UML) were relatively high in Weddell Sea Shelf Waters (~0.6 nM and 15 nM, respectively) and low in Drake Passage waters (~0.2 nM and 0.9 nM, respectively). In the Bransfield Strait, representing a mixture of waters from the Weddell Sea and the Antarctic Circumpolar Current (ACC), concentrations of DFe were ~0.4 nM and of TaLFe ~1.7 nM. The highest concentrations of DFe and TaLFe in the UML were found at shallow coastal stations close to Livingston Island (~1.6 nM and 100 nM, respectively). The ratio of TaLFe:DFe varied with the distance to land: ~45 at the shallow coastal stations, ~15 in the high-salinity waters of Bransfield Strait, and ~4 in ACC waters. Concentrations of DFe increased slightly with depth in the water column, while that of TaLFe did not show any consistent trend with depth. Our Fe data are discussed in regard to the hydrography and water circulation patterns in the study area, and with the hypothesis that the relatively high rates of primary production in the central regions of the Scotia Sea are partially sustained by natural iron enrichment resulting from a northeasterly flow of iron-rich coastal waters originating in the South Shetland Islands-Antarctic Peninsula region.

The carbon cycle is a major forcing component in the global climate system. Modelling studies, aiming to explain recent and past climatic changes and to project future ones, increasingly include the interaction between the physical and biogeochemical systems. Their ocean components are generally z-coordinate models that are conceptually easy to use but that employ a vertical coordinate that is alien to the real ocean structure. Here, we present first results from a newly-developed isopycnic carbon cycle model and demonstrate the viability of using an isopycnic physical component for this purpose. As expected, the model represents well the interior ocean transport of biogeochemical tracers and produces realistic tracer distributions. Difficulties in employing a purely isopycnic coordinate lie mainly in the treatment of the surface boundary layer which is often represented by a bulk mixed layer. The most significant adjustments of the ocean biogeochemistry model HAMOCC, for use with an isopycnic coordinate, were in the representation of upper ocean biological production. We present a series of sensitivity studies exploring the effect of changes in biogeochemical and physical processes on export production and nutrient distribution. Apart from giving us pointers for further model development, they highlight the importance of preformed nutrient distributions in the Southern Ocean for global nutrient distributions. The sensitivity studies show that iron limitation for biological particle production, the treatment of light penetration for biological production, and the role of diapycnal mixing result in significant changes of nutrient distributions and liniting factors of biological production.

The basal regions of continental ice sheets are gaps in our current understanding of the Earth's biosphere and biogeochemical cycles. We draw on existing and new chemical data sets for subglacial meltwaters to provide the first comprehensive assessment of sub-ice sheet biogeochemical weathering. We show that size of the ice mass is a critical control on the balance of chemical weathering processes and that microbial activity is ubiquitous in driving dissolution. Carbonate dissolution fueled by sulfide oxidation and microbial CO2 dominate beneath small valley glaciers. Prolonged meltwater residence times and greater isolation characteristic of ice sheets lead to the development of anoxia and enhanced silicate dissolution due to calcite saturation. We show that sub-ice sheet environments are highly geochemically reactive and should be considered in regional and global solute budgets. For example, calculated solute fluxes from Antarctica (72–130 t yr−1) are the same order of magnitude as those from some of the world's largest rivers and rates of chemical weathering (10–17 t km−2 yr−1) are high for the annual specific discharge (2.3–4.1 × 10−3 m). Our model of chemical weathering dynamics provides important information on subglacial biodiversity and global biogeochemical cycles and may be used to design strategies for the first sampling of Antarctic Subglacial Lakes and other sub-ice sheet environments for the next decade.