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Our study makes use of a fortuitous oceanographic data set collected around the remote sub-Antarctic island of Bouvetøya by a conductivity–temperature–depth recorder (CTD) integrated with a satellite-relayed data logger deployed on an adult female southern elephant seal (Mirounga leonina) to describe the seasonal evolution of the western shelf waters. The instrumented seal remained in waters over the shelf for 259 days, collecting an average of 2.6 (±0.06) CTD profiles per day, providing hydrographic data encompassing the late austral summer and the entire winter. These data document the thermal stratification of the upper water layer due to summer surface heating of the previous year's Antarctic Surface Water, giving way to a cold subsurface layer at about 100 m as the austral winter progressed, with a concomitant increase in salinity of the upper layer. Upper Circumpolar Deep Water was detected at a depth of approximately 200 m along the western shelf of Bouvetøya throughout the year. These oceanographic data represent the only seasonal time series for this region and the second such animal–instrument oceanographic time series in the sub-Antarctic domain of the Southern Ocean.

The Antarctic fur seal (Arctocephalus gazella) is a key marine predator in the Southern Ocean, a region that has recently started to show changes as a result of global climate change. Here, carbon (δ 13 C) and nitrogen (δ 15 N) stable isotope analyses on whole blood and plasma samples were used to examine the isotopic niche of lactating female Antarctic fur seals. Using recently developed Bayesian approaches to determine changes in isotopic niche, a significant increase in δ 13 C and δ 15 N was found between 1997 and 2015; this change occurred at an average rate of 0.067‰ (δ 13 C) and 0.072‰ (δ 15 N) per year over this period. This suggests that a marked isotopic niche shift has occurred over this period, which very likely corresponds to a shift in diet towards prey at a higher trophic level, such as fish (replacing krill). Although our sampling design prevented us from exploring a seasonal trend in a conclusive manner, our data suggest that concurrent increases in δ 13 C and δ 15 N might occur as the breeding season progresses. At a seasonal scale, an average decrease of −0.7‰ per month (95% confidence interval=[−0.9; −0.6]) in δ 13 C might have occurred, concurrently with an average increase of 1.1‰ per month in δ 15 N. The results of this study constitute the first isotopic assessment for female Antarctic fur seals from Bouvetøya and provide a baseline for the use of this predator species as a sentinel of the marine trophic system in one of the least studied areas within this species' distributional range.

Penguins are a monophyletic group in which many species are found breeding sympatrically, raising questions regarding how these species coexist successfully. Here, the isotopic niche of three sympatric pygoscelid penguin species was investigated at Powell Island, South Orkney Islands, during two breeding seasons (austral summers 2013–2014 and 2015–2016). Measurements of carbon (δ13C) and nitrogen (δ15N) stable isotope ratios were obtained from blood (adults) or feather (chicks) samples collected from Adélie Pygoscelis adeliae, chinstrap P. antarctica, and gentoo P. papua penguins. Isotopic niche regions (a proxy for the realized trophic niches) were computed to provide estimates of the trophic niche width of the studied species during the breeding season. The isotopic niche regions of adults of all three species were similar, but gentoo chicks had noticeably wider isotopic niches than the chicks of the other two species. Moderate to strong overlap in isotopic niche among species was found during each breeding season and for both age groups, suggesting that the potential for competition for shared food sources was similar during the two study years, although the actual level of competition could not be determined owing to the lack of data on resource abundance. Clear interannual shifts in isotopic niche were seen in all three species, though of lower amplitude for adult chinstrap penguins. These shifts were due to variation in carbon, but not nitrogen, isotopic ratios, which could indicate either a change in isotopic signature of their prey or a switch to an alternative food web. The main conclusions of this study are that (1) there is a partial overlap in the isotopic niches of these three congeneric species and that (2) they responded similarly to changes that likely occurred at the base of their food chain between the 2 years of the study.

Species with similar ecological requirements that overlap in range tend to segregate their niches to minimize competition for resources. However, the niche segregation possibilities for centrally foraging predators that breed on isolated Subantarctic islands may be reduced by spatial constraints and limitations in the availability of alternative prey. In this study we examined spatial and trophic aspects of the foraging niches of two sympatrically breeding penguin species, macaroni (Eudyptes chrysolophus; MAC) and chinstrap (Pygoscelis antarcticus; CHIN) penguins, at Bouvetøya over two breeding seasons. To measure at-sea movements and diving behaviour, 90 MACs and 49 CHINs were equipped with GPS loggers and dive recorders during two austral summer breeding seasons (2014/15 and 2017/18). In addition, blood samples from tracked birds were analysed for stable isotopes to obtain dietary information. CHINs displayed marked interannual variation in foraging behaviour, diving deeper, utilizing a larger foraging area and displaying enriched values of δ15N in 2014/15 compared to the 2017/18 breeding season. In contrast, MACs dove to similar depths and showed similar δ15N values, while consistently utilizing larger foraging areas compared to CHINs. We suggest that low krill abundances in the waters around Bouvetøya during the 2014/15 season resulted in CHINs shifting toward a diet that increased their niche overlap with MACs. Our findings may partly explain the decreasing number of breeding CHINs at the world’s most remote island, Bouvetøya, while also highlighting the importance of characterizing niche overlap of species using multi-season data sets.

Antarctic fur seal Arctocephalus gazella pup production at Nyrøysa, Bouvetøya was estimated to be approximately 15,000 per annum during each of four summers from 1996 to 2002, indicating a total population of about 66,000. While the Bouvetøya population is the second largest for this species, pup production at this site still accounts for only 2.4% of the global total. This population experienced a mean annual rate of increase of 30.6% for the period 1989–1996, perhaps due, in part, to significant immigration, but has been stable since 1996. Historical accounts of significant numbers of animals being present towards the end of the period of sealing (C.1800–1930), indicate that the geographic isolation and inaccessibility of this site may have resulted in the Bouvetøya population being one of three populations that survived a series of periods of extreme exploitation of this species.

Entanglements of Antarctic fur seals Arctocephalus gazella were recorded during four summers from 1996 to 2002 at the subantarctic island, Bouvetøya. Rates of entanglement varied between 0.024% and 0.059%. These rates are low for a pinniped population and might be because of the geographic isolation of the haulout site. An apparent decrease in the levels of entanglement over the course of the study was likely due, at least in part, to the removal of entanglements by observers. At least two-thirds of entangling materials were generated by fishery sources. Since there is no known local source of anthropogenic marine pollution, seals become entangled either in waters distant from the island, or when materials drift into local waters. Significantly more subadults were found entangled than expected from the postulated population age class distribution.

Abstract Solar heated, fresh Antarctic Surface Water (ASW) is a permanent feature along the Eastern Weddell Sea (EWS) coast in summer down to a depth of roughly 200 m. Recently, ASW has been observed beneath the Fimbul Ice Shelf, suggesting that it might play an important role in basal melting. We propose that wind-driven coastal downwelling is the main mechanism that spreads ASW beneath the ice shelf in this sector of Antarctica. We validate this hypothesis with observations, scaling analyses, and numerical modeling, along three principle lines: (i) data analyses of about 1500 salinity profiles collected by instrumented seals indicate that the observed freshening of the coastal water column is likely explained by the on-shore Ekman transport and subsequent downwelling of ASW; (ii) an analytical model of the coastal momentum balance indicates that wind-driven downwelling is capable of depressing the buoyant surface water to a depth similar to the ice shelf draft; and (iii) simulations from both idealized and regional eddy-resolving numerical ice shelf/ocean models support our proposition. Our main conclusion is that wind-driven spreading of ASW beneath the ice shelf occurs when downwelling exceeds the depth of the ice shelf base. Furthermore, our study adds to the understanding of the oceanic processes at the Antarctic Slope Front in the EWS, with possible implications for other sectors of Antarctica.

The use of biologging instruments has greatly improved our understanding of the behaviour, physiology and ecology of free-ranging marine mammals. However, handling wild animals and attaching instruments to streamlined bodies can cause stress and potentially influence behaviour and swimming/diving energetics. The goals of this study, undertaken on Bouvetøya, were (1) to determine if the first trip to sea after instrumentation is representative of subsequent trips in lactating Antarctic fur seals, to explore potential handling effects and assess possible biases in having multiple short-duration deployments (inflating N, using a limited number of tags) and (2) to evaluate potential effects of two different instrument combinations (SMRU satellite data relay loggers and very high frequency radio transmitters versus Wildlife Computers time–depth recorders and very high frequency radio transmitters) on trip durations, dive parameters, female body condition and pup growth. Handling did not appear to have any effects on the parameters studied; data from the first and second trips did not differ significantly. This implies that multiple short-term deployments are unlikely to result in biased data in this species. Instrument type did have measurable effects; time-at-sea was greater and pup growth was lower for pairs in which mothers carried bulkier instruments. This suggests that instrument streamlining is important to avoid negative impacts and that bulkier equipment should be deployed on lactating females with caution and only for short periods. The study highlights that instrument effects should be taken into account when comparing data from experiments collected using different equipment packages. Keywords: Bioenergetics; biologging; instrument effects; SRDLs; TDRs; VHFs.

Antarctic fur seal (Arctocephalus gazella) colonies are found on sub-Antarctic islands around the continent. These islands experience a range of conditions in terms of physical and biological habitat, creating a natural laboratory to investigate local genetic adaptation. One striking habitat difference is in the availability of Euphausia superba krill as prey, which has led to A. gazella exhibiting a range of diets. A. gazella in some colonies consume exclusively krill, while their conspecifics in other colonies feed mainly on fish and consume few to no krill. To investigate potential adaptations to these different prey fields, reduced representation genome sequencing was conducted on A. gazella from the 8 major colonies. Twenty-seven genomic regions exhibiting signatures of natural selection were identified. Two of these genomic regions were clearly associated with seals living in krill-dominated areas or those in fish-dominated areas. Twenty-two additional genomic regions under selection showed a pattern consistent with prey differences as the driver of selection after historical migrations from krill-dominated habitats where lineages evolved to present krill-poor habitat areas were taken into account. Only 1 of the genomic regions identified appeared to be explained by any other environmental variable analysed (depth). Genomic regions under prey-driven selection included genes associated with regulation of gene expression, skeletal development, and lipid metabolism. Adaptation to local prey has implications for spatial management of this species and for the potential impacts of climate- or harvest-driven reductions in krill abundance on these seals. KEY WORDS: Arctocephalus gazella · Double digest restriction-site associated DNA sequencing · ddRAD · Diet · Euphausia superba · Natural selection

Despite the exclusion of the Southern Ocean from assessments of progress towards achieving the Convention on Biological Diversity (CBD) Strategic Plan, the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) has taken on the mantle of progressing efforts to achieve it. Within the CBD, Aichi Target 11 represents an agreed commitment to protect 10% of the global coastal and marine environment. Adopting an ethos of presenting the best available scientific evidence to support policy makers, CCAMLR has progressed this by designating two Marine Protected Areas in the Southern Ocean, with three others under consideration. The region of Antarctica known as Dronning Maud Land (DML; 20°W to 40°E) and the Atlantic sector of the Southern Ocean that abuts it conveniently spans one region under consideration for spatial protection. To facilitate both an open and transparent process to provide the vest available scientific evidence for policy makers to formulate management options, we review the body of physical, geochemical and biological knowledge of the marine environment of this region. The level of scientific knowledge throughout the seascape abutting DML is polarized, with a clear lack of data in its eastern part which is presumably related to differing levels of research effort dedicated by national Antarctic programmes in the region. The lack of basic data on fundamental aspects of the physical, geological and biological nature of eastern DML make predictions of future trends difficult to impossible, with implications for the provision of management advice including spatial management. Finally, by highlighting key knowledge gaps across the scientific disciplines our review also serves to provide guidance to future research across this important region.

Global warming is affecting the population dynamics and trophic interactions across a wide range of ecosystems and habitats. Translating these real-time effects into their long-term consequences remains a challenge. The rapid and extreme warming period that occurred after the Last Glacial Maximum (LGM) during the Pleistocene–Holocene transition (7–12 thousand years ago) provides an opportunity to gain insights into the long-term responses of natural populations to periods with global warming. The effects of this post-LGM warming period have been assessed in many terrestrial taxa, whereas insights into the impacts of rapid global warming on marine taxa remain limited, especially for megafauna. In order to understand how large-scale climate fluctuations during the post-LGM affected baleen whales and their prey, we conducted an extensive, large-scale analysis of the long-term effects of the post-LGM warming on abundance and inter-ocean connectivity in eight baleen whale and seven prey (fish and invertebrates) species across the Southern and the North Atlantic Ocean; two ocean basins that differ in key oceanographic features. The analysis was based upon 7032 mitochondrial DNA sequences as well as genome-wide DNA sequence variation in 100 individuals. The estimated temporal changes in genetic diversity during the last 30,000 years indicated that most baleen whale populations underwent post-LGM expansions in both ocean basins. The increase in baleen whale abundance during the Holocene was associated with simultaneous changes in their prey and climate. Highly correlated, synchronized and exponential increases in abundance in both baleen whales and their prey in the Southern Ocean were indicative of a dramatic increase in ocean productivity. In contrast, the demographic fluctuations observed in baleen whales and their prey in the North Atlantic Ocean were subtle, varying across taxa and time. Perhaps most important was the observation that the ocean-wide expansions and decreases in abundance that were initiated by the post-LGM global warming, continued for millennia after global temperatures stabilized, reflecting persistent, long-lasting impacts of global warming on marine fauna.

Over the last decade, several hundred seals have been equipped with conductivity-temperature-depth sensors in the Southern Ocean for both biological and physical oceanographic studies. A calibrated collection of seal-derived hydrographic data is now available, consisting of more than 165,000 profiles. The value of these hydrographic data within the existing Southern Ocean observing system is demonstrated herein by conducting two state estimation experiments, differing only in the use or not of seal data to constrain the system. Including seal-derived data substantially modifies the estimated surface mixed-layer properties and circulation patterns within and south of the Antarctic Circumpolar Current. Agreement with independent satellite observations of sea ice concentration is improved, especially along the East Antarctic shelf. Instrumented animals efficiently reduce a critical observational gap, and their contribution to monitoring polar climate variability will continue to grow as data accuracy and spatial coverage increase.

The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.

Southern Ocean ecosystems are under pressure from resource exploitation and climate change1,2. Mitigation requires the identification and protection of Areas of Ecological Significance (AESs), which have so far not been determined at the ocean-basin scale. Here, using assemblage-level tracking of marine predators, we identify AESs for this globally important region and assess current threats and protection levels. Integration of more than 4,000 tracks from 17 bird and mammal species reveals AESs around sub-Antarctic islands in the Atlantic and Indian Oceans and over the Antarctic continental shelf. Fishing pressure is disproportionately concentrated inside AESs, and climate change over the next century is predicted to impose pressure on these areas, particularly around the Antarctic continent. At present, 7.1% of the ocean south of 40°S is under formal protection, including 29% of the total AESs. The establishment and regular revision of networks of protection that encompass AESs are needed to provide long-term mitigation of growing pressures on Southern Ocean ecosystems.